Gene detail information of Glyur004998s00040147 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G23420.2 | 1.00E-08 | high-mobility group box 6 |
| NR | AFK37944.1 | 9.78E-23 | unknown [Lotus japonicus] |
| Swissprot | tr|Q8LDF9|HMGB7_ARATH | 3.00E-15 | High mobility group B protein 7 |
| trEMBL | tr|I3SCF2|I3SCF2_LOTJA | 4.00E-23 | Uncharacterized protein {ECO:0000313|EMBL:AFK37944.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04998 | 9081 | 10357 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.245 |
| SRR1783600 | control | 1.016 |
| SRR1783602 | moderate drought stress | 8.263 |
| SRR1811619 | moderate drought stress | 10.789 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.758 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.636 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.936 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.307 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.297 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.752 |
| SRR2868004 | Drought Stress (root) | 1.036 |
| SRR2967015 | Control (root) | 0.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.213 |
| SRR9715742 | Root | 0.360 |
| SRR9715743 | Root | 0.178 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.250 |
| SRR8749028 | MeJA induced 9h | 2.894 |
| SRR8749029 | MeJA induced 9h | 0.131 |
| SRR8749030 | Uninduced | 0.415 |
| SRR8749031 | Uninduced | 0.167 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.569 |
| SRR8400027 | Control - Root | 1.806 |