Gene detail information of Glyur004983s00044539 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07140.1 | 4.00E-15 | Pleckstrin homology (PH) domain superfamily protein |
| NR | KHN03694.1 | 5.45E-20 | Ran-binding protein 1 like b [Glycine soja] |
| Swissprot | tr|Q9LMK7|RBP1A_ARATH | 2.00E-18 | Ran-binding protein 1 homolog a |
| trEMBL | tr|I3T4L2|I3T4L2_MEDTR | 7.00E-20 | Uncharacterized protein {ECO:0000313|EMBL:AFK47454.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04983 | 2773 | 3556 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.233 |
| SRR1783600 | control | 3.564 |
| SRR1783602 | moderate drought stress | 2.050 |
| SRR1811619 | moderate drought stress | 3.150 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.996 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.290 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.302 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.899 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.820 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.415 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.447 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.665 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.114 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.077 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.243 |
| SRR9715740 | Leaf | 0.113 |
| SRR9715741 | Leaf | 0.148 |
| SRR9715739 | Root | 0.037 |
| SRR9715742 | Root | 0.118 |
| SRR9715743 | Root | 0.191 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.054 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.084 |
| SRR8400027 | Control - Root | 0.090 |