Gene detail

Gene detail information of Glyur004972s00045526

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49620.1	7.00E-15	Cyclin-dependent kinase inhibitor family protein
NR	XP_007155934.1	1.30E-61	hypothetical protein PHAVU_003G244700g [Phaseolus vulgaris]
Swissprot	tr\|Q94CL9\|KRP7_ARATH	1.00E-17	Cyclin-dependent kinase inhibitor 7
trEMBL	tr\|V7CEY3\|V7CEY3_PHAVU	5.00E-62	Uncharacterized protein {ECO:0000313\|EMBL:ESW27928.1}

Sequence

Transcript Sequence

>Glyur004972s00045526.1
CCCAAACAAACAACAAACAATATTCCTTCTATATATGATTCTTTCTTCCCTACCCCATGATTCTCGTTTGAACCTCACTCTCCCTCCTTCCACTCCCCCCTCCTCTCTCTCACCTCTTCCAACCGCCACACCATTTTCCGTTTCCGATACCCTCCACGTGTCACTCCTCTGATTGAGATTGCGGTTTCAAAATGGAGATGGCTCAAGTGAGAAAGAGAACAAGAGCTCGAGCTGCAGCATTGGCCACCGGAGCTGCTGCTGCTGCTGCTGCTGCAACATCCACTACTTCACCCAAAAAGAGAAAGACCGTCATCAACAACACCAACCAAGACCAAGACCAATTCATGTTCTCACCATCCTCCTTCGTTCAGCTTATGGCTANGAGTACAACAAGCACCAGTAGTAGTGGCGCACCGGCGCCGGAGGAGGAACGCTGCTCCACCCCCACCTCCGATGATTCCCCGGCGTCTTGTTGTTCCNGCAATGGATATTCCTTTGACCTCCATGAAAAGAGGATCACCAAATTCTCAGATCCAGAGGTAGAGAGCGCGCAAGTTGAAGAAACGACGACGTGCGACTGCGGTGACCAAATTATAAGGAGAGAGGTGATCATGAGTCTCTCGAGCGAGCTTCGAACAAATTCGCAAGAGGTGAAGGAGGAGAAGAANCCAACAACGAAGAAGACCGAATCTCGCTGCATTCTATCAACAACGCCTCAAAAGATGCCAACGGATTCGGAGCTCGAAGAATTCTTCTCTGCCGCCGAGAAAGACATCCAGAAACGGTTTTCATACAAGTATAATTATGATATTGTGAAGGATGTGCCTTTGGAAGGACGTTATGAGTGGGTTCANCTGAAGCCTTAAAAGTTGCCCCTTTTGGCTCTTCTTCTTGCTGATCATCGCCAACCTTGAAGGAAGAAGAGCATGATATAATGTGGACTAGTACTTAGAAAATGCCACTTGCTGTACTGACATTTTTCTTACATTAATTTCACTTTAGGTACTCAATTCCATGTCCTATCTTTCACGCTAGGAGTGCGCTTTTTGTTCGGGCCGGGTGTGTACAGTTCCCCCCCCCCCCTTCAGTGGCTAAGGGACTCGATCGGCGCCGTTTGTTATTTGTGTGTACGGGTTATATAGTTATACGGAGAAGCTAGCTAGCTAGTCCTGAGCAGAATTCTGTAAATTCCCTTGANGGTGATGACTGTAGCTAGAACAAAAACAAACGGTTCCTAGCTCATATAACAAAATTCTAGTCTCATTTTTCTTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04972	8310	10209	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0007050 cell cycle arrest

cellular_component
GO:0005634 nucleus

molecular_function
GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004972s00045526.1	PF02234.14	CDI	175	222	1.40E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	84.724
SRR1783600	control	85.867
SRR1783602	moderate drought stress	104.907
SRR1811619	moderate drought stress	106.701

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	67.077
DRR006520	Root Summer glycyrrhizin high producing strain	67.896
DRR006521	Root Winter glycyrrhizin high producing strain	3.589
DRR006522	Root Winter glycyrrhizin high producing strain	3.328
DRR006523	Root Summer glycyrrhizin low producing strain	27.105
DRR006524	Root Summer glycyrrhizin low producing strain	26.689
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.919
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.952

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.365
SRR2868004	Drought Stress (root)	7.933
SRR2967015	Control (root)	9.684

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.588
SRR9715740	Leaf	2.029
SRR9715741	Leaf	1.773
SRR9715739	Root	31.608
SRR9715742	Root	33.424
SRR9715743	Root	29.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	25.050
SRR8400027	Control - Root	33.439