Gene detail

Gene detail information of Glyur004967s00044730.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G49820.1	1.00E-71	S-methyl-5-thioribose kinase
NR	XP_007143064.1	1.02E-103	hypothetical protein PHAVU_007G040800g [Phaseolus vulgaris]
COG	YP_007513008.1	2.00E-45	putative S-methyl-5-thioribose kinase [Bradyrhizobium oligotrophicum S58]
Swissprot	tr\|Q9C6D2\|MTK_ARATH	4.00E-87	Methylthioribose kinase
trEMBL	tr\|V7BDR2\|V7BDR2_PHAVU	4.00E-104	Uncharacterized protein {ECO:0000313\|EMBL:ESW15058.1}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04967	11019	11609	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00899	mtnK	EC:2.7.1.100	Cysteine and methionine metabolism	map00270

Gene Ontology

molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	2.180
SRR1783600	control	2.258
SRR1783602	moderate drought stress	2.566
SRR1811619	moderate drought stress	3.087

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.370
DRR006520	Root Summer glycyrrhizin high producing strain	2.032
DRR006521	Root Winter glycyrrhizin high producing strain	1.507
DRR006522	Root Winter glycyrrhizin high producing strain	0.720
DRR006523	Root Summer glycyrrhizin low producing strain	0.218
DRR006524	Root Summer glycyrrhizin low producing strain	0.496
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.146
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.993

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.709
SRR2868004	Drought Stress (root)	1.423
SRR2967015	Control (root)	1.260

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.370
SRR9715740	Leaf	4.561
SRR9715741	Leaf	5.692
SRR9715739	Root	1.223
SRR9715742	Root	1.649
SRR9715743	Root	1.898

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.209
SRR8749028	MeJA induced 9h	0.265
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.784
SRR8749031	Uninduced	0.153
SRR8749032	Uninduced	0.028

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.937
SRR8400027	Control - Root	3.005