Gene detail information of Glyur004967s00044729 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G15220.1 | 2.00E-65 | Plant basic secretory protein (BSP) family protein |
| NR | AFK40641.1 | 1.59E-123 | unknown [Medicago truncatula] |
| Swissprot | tr|C0HJG8|BSP_BOSSE | 1.00E-12 | Basic secretory protease {ECO:0000303|PubMed:22773449} (Fragments) |
| trEMBL | tr|I3SK49|I3SK49_MEDTR | 6.00E-124 | Uncharacterized protein {ECO:0000313|EMBL:AFK40641.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04967 | 9432 | 10071 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004967s00044729.1 | PF04450.7 | BSP | 26 | 197 | 4.40E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.661 |
| SRR1783600 | control | 2.458 |
| SRR1783602 | moderate drought stress | 0.805 |
| SRR1811619 | moderate drought stress | 0.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.275 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.483 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.750 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.431 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 78.423 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 78.514 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.780 |
| SRR2868004 | Drought Stress (root) | 17.234 |
| SRR2967015 | Control (root) | 11.447 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 145.846 |
| SRR9715740 | Leaf | 99.351 |
| SRR9715741 | Leaf | 111.967 |
| SRR9715739 | Root | 7.908 |
| SRR9715742 | Root | 44.585 |
| SRR9715743 | Root | 35.859 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.833 |
| SRR8749028 | MeJA induced 9h | 10.285 |
| SRR8749029 | MeJA induced 9h | 7.594 |
| SRR8749030 | Uninduced | 10.958 |
| SRR8749031 | Uninduced | 6.225 |
| SRR8749032 | Uninduced | 3.027 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.554 |
| SRR8400027 | Control - Root | 10.784 |