Gene detail information of Glyur004955s00045576 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G58770.1 | 1.00E-48 | Undecaprenyl pyrophosphate synthetase family protein |
| NR | KHN40063.1 | 1.63E-80 | Dehydrodolichyl diphosphate synthase 2 [Glycine soja] |
| COG | YP_006406839.1 | 4.00E-39 | undecaprenyl diphosphate synthase [Belliella baltica DSM 15883] |
| Swissprot | tr|Q56Y11|DDPS2_ARATH | 1.00E-67 | Dehydrodolichyl diphosphate synthase 2 |
| trEMBL | tr|I1MBA3|I1MBA3_SOYBN | 6.00E-80 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G37190.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04955 | 3133 | 3519 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11778 | DHDDS, RER2, SRT1 | EC:2.5.1.87 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004955s00045576.1 | PF01255.14 | Prenyltransf | 2 | 124 | 4.60E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.078 |
| SRR1783600 | control | 0.269 |
| SRR1783602 | moderate drought stress | 0.224 |
| SRR1811619 | moderate drought stress | 0.132 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.140 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.184 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.144 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 71.113 |
| SRR9715740 | Leaf | 79.379 |
| SRR9715741 | Leaf | 84.344 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.166 |
| SRR9715743 | Root | 0.317 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.050 |
| SRR8749030 | Uninduced | 0.082 |
| SRR8749031 | Uninduced | 0.083 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.383 |
| SRR8400027 | Control - Root | 0.279 |