Gene detail information of Glyur004944s00043918 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09670.1 | 2.00E-104 | Oxidoreductase family protein |
| NR | XP_004489742.1 | 0 | PREDICTED: uncharacterized oxidoreductase At4g09670-like [Cicer arietinum] |
| COG | NP_522474.1 | 8.00E-45 | hypothetical protein RS01685 [Ralstonia solanacearum GMI1000] |
| Swissprot | tr|Q9SZ83|Y4967_ARATH | 1.00E-141 | Uncharacterized oxidoreductase At4g09670 |
| trEMBL | tr|B7FJM8|B7FJM8_MEDTR | 0 | Putative uncharacterized protein {ECO:0000313|EMBL:ACJ84957.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04944 | 560 | 4946 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004944s00043918.1 | PF01408.17 | GFO_IDH_MocA | 10 | 130 | 5.30E-23 |
| Glyur004944s00043918.1 | PF02894.12 | GFO_IDH_MocA_C | 152 | 256 | 8.00E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 84.012 |
| SRR1783600 | control | 85.588 |
| SRR1783602 | moderate drought stress | 136.900 |
| SRR1811619 | moderate drought stress | 137.956 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 195.034 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 192.900 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.972 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.120 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 50.925 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 50.129 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.378 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.976 |
| SRR2868004 | Drought Stress (root) | 11.393 |
| SRR2967015 | Control (root) | 9.901 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 9.432 |
| SRR9715740 | Leaf | 26.013 |
| SRR9715741 | Leaf | 22.339 |
| SRR9715739 | Root | 97.231 |
| SRR9715742 | Root | 107.437 |
| SRR9715743 | Root | 97.940 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.104 |
| SRR8749028 | MeJA induced 9h | 0.116 |
| SRR8749029 | MeJA induced 9h | 0.054 |
| SRR8749030 | Uninduced | 0.037 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 141.796 |
| SRR8400027 | Control - Root | 124.279 |