Gene detail

Gene detail information of Glyur004921s00041267

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G22360.1	0	DNAJ heat shock family protein
NR	XP_003525050.1	0	PREDICTED: dnaJ homolog 1, mitochondrial-like isoform X1 [Glycine max]
COG	NP_681579.1	2.00E-124	molecular chaperone DnaJ [Thermosynechococcus elongatus BP-1]
Swissprot	tr\|Q38813\|DNAJ1_ARATH	3.00E-55	Chaperone protein dnaJ 1, mitochondrial (Precursor)
trEMBL	tr\|K7KQW8\|K7KQW8_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G31080.2}

Sequence

Transcript Sequence

>Glyur004921s00041267.1
CTAGAGCTAGAACTAGAATCTAGAGCAGAATCTGAAATGCTCTGTGTTTTTTTCTTCTTCCCGATTTGGCGATTTCCCCTTCGCCTCTCGGAACAGCTCCACCCTCCCTCCCACTGCTAGCAGAGGTACATCAACAAAGGTCATATCGATTAGTATATTGTCGTGCTGAAGATATATTGGATGGCCATAACACCTTTAGGTAGTAGTACATTTTCTGCACAATGGGGAATTCATCCTCAGCTGTTACTGAAGTCCAGTATGACAGGCAAGGTTGCATCATCCAGCTACAAGATTCCTTGCATACACTATTTAATGCTGGTTTGTCTCAAACTTCACATCGTCGCAAGGGATCAAGGTTGATTGTTAGAGCAGATACAGATTATTATTCTGTCCTTGGGGTTTCAAGAAATGCCAGTAAATCTGAAATTAAGAGCGCTTATCGGAAGCTTGCCCGCAGTTATCATCCAGATGTGAACAAAGAACCTGATGCAGAAGAAAAGTTTAAGGAGATCAGCAATGCATATGAGGTCTTATCAGACGATGAGAAACGATCTATATATGACAGATATGGAGAGGCTGGGCTTAAAGGTTCTGGAATGGGCATGGGGGATTTCAGCAATCCTTTTGATCTGTTTGAGACATTGTTTGAGGGGATGAATCGCGGTAATGCAAGAGGTTCTTGGAATGGAGCAGTTGATGGCGAAGATGAGTATTACAGTATTGTTTTGAACTTCAAAGAAGCGGTTTTCGGTGTAGAAAAGGAGATAGAGATAAGCCGATTAGAGAGCTGTGGAACTTGCAATGGTTCAGGGGCTAAACCAGGGACTACACCATCCAGATGCAGTACATGTGGCGGTCAAGGCCGGGTCGTCTCATCGACAAGAACTCCATTAGGCATCTTCCAGCAGTCGATGATGTGCTCTTCATGCAATGGGACCGGAGAAATCTCAACACCTTGCAGCACATGTTCCGGGGACGGTCGAGTGAGGAAAACAAAGCGGATAAGTCTGAAGGTCCCTGCTGGTGTGGACTCTGGTAGTCGTTTAAGGGTCCGAAATGAAGGGAGTGCCGGAAGGCGAGGGGGTTCCCCCGGCGACCTCTTTGTCGTCATCGAGGTTATCCCGGATCCCGTCCTTAAACGAGACGACACCAACATCTTATACACCTGCAAGGTTTCTTACATTGATGCAATCTTGGGCACTACAATGAAGGTTCCAACTGTTGATGGAATGGTTGATTTGAAAATCCCAGCTGGGACTCAACCCAACACAACACTTGTTATGGCTAAGAAAGGTGTTCCCTTTCTGAACAAGAACAATATGAGAGGAGACCAGTTGGTTCGTGTGCAAGTTGAGATCCCTAAAAGACTCAACAGCGATGAGAGAAAGCTTATTGAGGAACTTGCTGATTTAAGCAAAGGCAAAACTGCCACCGGTATGAGATAACATTTTCTGGTAACCTATGCTGTGTATTTATCTATGTATTTATAATAATAATATTCTATTTATACTTTCTTGGATGCATCATTCTTGATTACACACTTAGCAGCCATGGAACTATGGGAGGGTTGAAAATGTGTTGGTAGATGTAGTTAGTTTTTTTTCCTTAGAGAAAAGTTAGAGATATTTTTTTTATTCCTTTTTATTTTTTTCAGTGCAACTTATACGTTTCTTGTAATTTATTTTTTTGGGGTGGGGTGATATTGCATTATACTTTAGGTTCAATGCTATCTTTATTATTTCCACAAATGTTATGCTCCATGACAAACCGAATTGTTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04921	334	7454	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006457 protein folding

GO:0009408 response to heat

molecular_function

GO:0005524 ATP binding

GO:0031072 heat shock protein binding

GO:0051082 unfolded protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004921s00041267.1	PF00226.26	DnaJ	53	114	3.00E-28
Glyur004921s00041267.1	PF00684.14	DnaJ_CXXCXGXG	190	253	7.60E-15
Glyur004921s00041267.1	PF01556.13	CTDII	311	390	2.20E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.241
SRR1783600	control	5.031
SRR1783602	moderate drought stress	8.002
SRR1811619	moderate drought stress	7.868

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.537
DRR006520	Root Summer glycyrrhizin high producing strain	13.976
DRR006521	Root Winter glycyrrhizin high producing strain	22.461
DRR006522	Root Winter glycyrrhizin high producing strain	22.492
DRR006523	Root Summer glycyrrhizin low producing strain	12.580
DRR006524	Root Summer glycyrrhizin low producing strain	12.752
DRR006525	Leaf Summer glycyrrhizin high producing strain	31.782
DRR006526	Leaf Summer glycyrrhizin high producing strain	32.106

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.331
SRR2868004	Drought Stress (root)	12.523
SRR2967015	Control (root)	12.310

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.356
SRR9715740	Leaf	38.100
SRR9715741	Leaf	22.663
SRR9715739	Root	3.998
SRR9715742	Root	6.659
SRR9715743	Root	7.375

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.872
SRR8749028	MeJA induced 9h	11.172
SRR8749029	MeJA induced 9h	7.282
SRR8749030	Uninduced	9.242
SRR8749031	Uninduced	6.432
SRR8749032	Uninduced	5.119

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	19.377
SRR8400027	Control - Root	17.314