Gene detail information of Glyur004919s00045265.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G16390.1 | 0 | SNF2 domain-containing protein / helicase domain-containing protein |
| NR | XP_004510995.1 | 0 | PREDICTED: transcriptional regulator ATRX homolog [Cicer arietinum] |
| COG | YP_006992695.2 | 1.00E-28 | SNF2 family N-terminal domain protein [Carnobacterium maltaromaticum LMA28] |
| Swissprot | tr|F4I8S3|CLSY3_ARATH | 7.00E-82 | SNF2 domain-containing protein CLASSY 3 |
| trEMBL | tr|I1LVC4|I1LVC4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G36460.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04919 | 5271 | 10364 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SNF2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10875 | RAD54L, RAD54 | EC:3.6.4.- | Homologous recombination | map03440 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004919s00045265.1 | PF00176.18 | SNF2_N | 231 | 503 | 2.90E-24 |
| Glyur004919s00045265.1 | PF00271.26 | Helicase_C | 613 | 684 | 8.50E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.015 |
| SRR1811619 | moderate drought stress | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.046 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.046 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.080 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.100 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.032 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.018 |
| SRR9715740 | Leaf | 0.054 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.027 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.031 |
| SRR8400027 | Control - Root | 0.026 |