Gene detail

Gene detail information of Glyur004908s00044170.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37760.1	1.00E-98	squalene epoxidase 3
NR	XP_006602293.1	1.04E-139	PREDICTED: squalene monooxygenase-like isoform X2 [Glycine max]
COG	YP_004916059.1	4.00E-48	squalene monooxygenase [Methylomicrobium alcaliphilum 20Z]
Swissprot	tr\|O48651\|ERG1_PANGI	1.00E-122	Squalene monooxygenase
trEMBL	tr\|K7MRG6\|K7MRG6_SOYBN	4.00E-140	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G14860.3}

Sequence

Transcript Sequence

>Glyur004908s00044170.1
ACTGTGTGGAGCAAATTGATGCACAAAGAGTGCTAGGATATGTTCTTTTCAAGGATGGGAAAAATACTAAGATGCCTTATCCCTTGAAAAATCTTCATGCTGATGTGACTGGTAGGAGCTTTCATAATGGACGAGAGGATGAGAGAAAAGGCTTCTTCTCTCCCCAACAAGGCACAGTAACATCTCTTCTTGAACAAGATAATAAAACCATTATAGGGGTCCAGTACAAGACCACAGATTGCCAAGAGCTTAAAGCTTATGCTCCCCTCACAGTTGTTTGCAATGGCTGTTTCTCAAATCTGCGTCACTCTCTCTGCCACCCCAAGGTAGAAGTGCCCTCTTGTTTTGTAGGTTTAGTCTTGGAGAATTGTCAACTCCCAATTGAAAATCACGGGCATGTTATTCTGGCAGATCCTTCCCCTGTCTTGTTTTATCGTATCAGCGGCACTGAGGTTCGCTGCTTAGTTGATATACCTGGTCAGAAAGTTCCTCCCATAGGTAATGGCGAAATGGCCAACTACCTAAAGACTATGATTCCACCTGAGCTTCATGATGCTTTTGTATCTGCAATTAATAGAGGAAAGATAAGAACCATGCCTAACAGTAGCATGCCAGCTGATCCCTATCCTACTCCTGGAGCTCTGTTATTGGGTGATGCTTTTAACATGCGTCATCCTTTGACTGGCGGAGGAATGACAGTGACACTGTCTGATATTGTTGTGCTACGGGATCTTCTTAAGCCGCTTTGTGACCTAAATGATACAACCTCACTATGCAGATATCTTGAATCCTTTTACACCTTGCGAAAGTCCAACAAAGGTCGAGTTATGTTAACAATGAACATCTTCCAGTGTGCATCAGGCATAATATTTCCCATCATCAAGGCTGAAGGAGTAAGGCAAACGTTCTTCCCCGCAACCTTACCAGCTTTCTATAGAAAAGCTGGCATGGTGCCATTAAGGAGTCATGTCCCCATTAATCCATTATACTATGCAAACAATAAAACACTAATCAGGAATTATTTTAAAATGGAAAAAGCTTCCGTTGTCAGGAATCGAACCCGGGTCTCCTGGGTGAAAGCCAGATATCCTAACCGCTGGACAACAATGGAATTCCTATTTATGTGGCTTTCAAATAATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04908	3384	9674	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00511	SQLE, ERG1	EC:1.14.14.17	Steroid biosynthesis	map00100
			Sesquiterpenoid and triterpenoid biosynthesis	map00909

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0004506 squalene monooxygenase activity

GO:0050660 flavin adenine dinucleotide binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004908s00044170.1	PF08491.5	SE	64	250	6.00E-78

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.840
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.999

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.000
SRR2868004	Drought Stress (root)	0.000
SRR2967015	Control (root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.000
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.000
SRR8400027	Control - Root	0.000