Gene detail

Gene detail information of Glyur004903s00044981

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G31940.1	1.00E-125	cytochrome P450, family 82, subfamily C, polypeptide 4
NR	XP_007133366.1	0	hypothetical protein PHAVU_011G173200g [Phaseolus vulgaris]
COG	YP_007058171.1	4.00E-20	cytochrome P450 [Rivularia sp. PCC 7116]
Swissprot	tr\|O49859\|C82A4_SOYBN	0	Cytochrome P450 82A4
trEMBL	tr\|V7AJB8\|V7AJB8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW05360.1}

Sequence

Transcript Sequence

>Glyur004903s00044981.1
CCTTAATTAGCTACAGCCTCCTAAAATGGATTTTGTTCTAAATGGCCTAATTAATGCCACTACAATTGGACTCCTTTCTCTAATAATCTTCTTGTGTTTGTTTATTTATCGCCCCTTTAAAGTTGCAAGTAACAAAGAGGTTCCTACAATTCCAGGTGCATGGCCAATCCTTGGTCATTTACCATTGCTTAGTGGTTCACAAACACCCCATAGAACCTTAGGTGCCTTGGCTGACAAATATGGACCCTTATTCTCCATCAAGCTTGGTGCCAAACGTGCTTTGGTACTCAACAACTGGCAAACGGCCAAGGAATGCTTCACCAAAAACGACATGGTCGTTTCATCTCGACCCAAATTGGTTGCAACTGAACTTATGGGCTACAATGGAGCCATGTTTGGTTTTGCACCCTATGGTCGTTATTGGCGCCAATTACGCAAGATTGCAACTTTAGAGATCCTCACCAATCACCGCGTCGAGCAACTATCCCATGTTCGTGCCTTGGAAGTTCGAACTTCTATCAAAGAGCTCTTCGGTGTTTGGTCTAACACAAAGAACGAGTCAGGTAGGACTTATGTGTTGGTGGAGTTGAAGCAATGGTTTACTCAATTGGCATTCAACATGGTTCTTCAAATGGCTGTTGGTAAACGATATTTCGGCGCTACCAATATTGTTGAAGGGGATGAAGCAGAGAGATGTGTAAAATCTTTGAGAGAGTTCATGCGTTTGATGGGGGTATTCACGGTGGGAGATGCTATTCCCTTTTTGAGAATCTTTGATTTTGGTGGCCATGAGAAGGCCATGAAAAAAACAGCCAAAGAATTGGATGAAATCTTAGACAAGTGGTTGAAGGAGCACAAGCAGAACAAGGCTATGGGTGAAAAGCTTGATCATGGTCAAGACTTTATGCACGTGATGCTTTCTTTAATTGATGGTACAGCAATTGATGAGTTTAAAGCTGATGACATAATCAAATCCACAACATTGGCACTAATTTTGGGAGGAGCTGACACAAGTGCTGTTGTCCTTACATGGGTCATATGCTTGCTATTGAAAAATCCTCTTATAATGGAAAAAGCAAAAGAAGAACTTGACACCCATGTTGGCAAAGAGAGATGCGCCATAAATGAGTCAGATATAAGTAAGTTAGAATATCTTCAAGCCATTGTCAAAGAAACACTAAGATTGTACCCGGTGAGTCCTCTCTCAGGGCCTCGTGAATTTTCAGAGAATTGCACTTTAGATCCATTAGAGTTCAAACCTGAAAGATTTCTTACAACTCATAAAGATGTTGATGTTAGGGGTCATCATTTTGAGCTATTGCCATTTGGATGTGGTAGAAGGATTTGTCCTGCAATATCCTTTGGCCTTCAAATGGTGCATTTAACTTTGGCAAGTTTTTTGCACTCCTTTGAAATCTCAAATCCATCAACTGAAATTGATATGACTGAAGCCTTTGGATTAAGCAACACCAAAGCTACTCCTCTTGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04903	5903	9614	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP82C4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004903s00044981.1	PF00067.17	p450	40	405	5.60E-54
Glyur004903s00044981.1	PF00067.17	p450	406	476	1.60E-12

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.486
SRR1783600	control	3.914
SRR1783602	moderate drought stress	20.394
SRR1811619	moderate drought stress	20.813

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.449
DRR006520	Root Summer glycyrrhizin high producing strain	0.455
DRR006521	Root Winter glycyrrhizin high producing strain	0.075
DRR006522	Root Winter glycyrrhizin high producing strain	0.256
DRR006523	Root Summer glycyrrhizin low producing strain	3.901
DRR006524	Root Summer glycyrrhizin low producing strain	3.539
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.559
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.705

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.477
SRR2868004	Drought Stress (root)	8.017
SRR2967015	Control (root)	7.750

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.853
SRR9715740	Leaf	24.000
SRR9715741	Leaf	178.106
SRR9715739	Root	2.742
SRR9715742	Root	3.528
SRR9715743	Root	2.859

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.181
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.055
SRR8749031	Uninduced	0.054
SRR8749032	Uninduced	0.065

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.666
SRR8400027	Control - Root	2.836