Gene detail

Gene detail information of Glyur004892s00040930

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G47800.1	2.00E-122	multidrug resistance-associated protein 4
NR	XP_007163104.1	1.41E-177	hypothetical protein PHAVU_001G206600g [Phaseolus vulgaris]
COG	NP_969385.1	1.00E-49	multidrug ABC transporter permease/ATPase [Bdellovibrio bacteriovorus HD100]
Swissprot	tr\|Q7DM58\|AB4C_ARATH	6.00E-153	ABC transporter C family member 4
trEMBL	tr\|V7D0C3\|V7D0C3_PHAVU	5.00E-178	Uncharacterized protein {ECO:0000313\|EMBL:ESW35098.1}

Sequence

Transcript Sequence

>Glyur004892s00040930.1
GCCCTCTTCTATTTTCTATTCTTATATCTCACTTAGCGTAGAATGACCATGACCATTGCTGGTCAAAGAAATGACATTTTTGAAAGAAAAAATGACTTACAAATACAACAACCAACCACGCCAAGAACAACCGATCAACGCATGGGAAAATTGACTTACAATTCATAAGTCATAACCAAAAAAATCCACCGGTCCGATGCAACTCCATGGTCATGCACGCATGTCTGTTTTTAGCAANCCTACAGTGCCATCTCTTTCTCATTCACAAATAGATATATAGCCCTGAATAAAAACAAACAGTAGCAAGTGTGTACTATTGAAGATTNCACACAAACATGTCCTCTGTAAATGTTACTTGGATGACTTCTCTGTCATGTATATCCCCCGTGAAACAAACCTCAGGGGAAACATTCATCTCAACTCTCCCTCAATGGCTGAGATTCATCTTCCTCTCTCCCTGTCCTCAGAGAGCACTCTTCTCTGCGGTTAATGTCCTACTCCTCTTCATCTTCTTCACATTTGGTCTCACTAAGCTCTATACAAAGTTCACCACCTCAAATGGCGGTTCCCCCACCGAACTCAACAAGCCCCTCATTGGTTATAACAGGTCTTGTGTCAAAACAAGTGTGTGGTTTAAGCTAACTTTAACAGCAACTGCTGTTTTGGCCATACTGTACTCTGTTTCTTGCGTTCTGGTGTTTAGCAGCTCCAACNTTGAGTCACAGTGGAAGCTAGTTGATGGAACGTTTTGGGTAGTCCAGGCCATAACACATGCAGTAGTTGCAATCTTAATCCTCCATGAGAAAAAACACGGAACTGTTGCTGTTTCACACCACCACCCACTGTCGCTTAGAGCTTATTGGGTTGCGACTTTCATCGTCATTTCCTTGTTCTCAGCATCCGGGGTTATACGTTTGGTCTCTGAAACCGAAAACAGAGACTCCATGGTCTTTAAGGTGGATGACGTGGCATCTTTCATTTCACTCCCACTGTCGCTGTTTCTTCTCTGTGTCGCAGTTAAAGGATCAACCGGCATTGTTGTGTCGGCGGAAGAAACACAAACACTTGGTGTTGACAACAACAACGAGGTAAAGGACCTGCAGTACCATGATGATACTACTGTGACCAAATCCAAATCCGAGGTTGTTACTGGCTTTGCTTCGGCTTCTATAGTATCCAAGGCATTTTGGATTTGGATAAACCCTTTGTTGAGTAAAGGGTACAAGTCGGCGTTGAAGATCGATGATGTTCCAATGCTTTCGCCAGAGCACAGAGCAGAGAAGATATCATCTCTCTTCGAATCAAATTGGCCCAAAACGAACGAAAAGCACCCAGTTAGAATCACTCTGATTCGGTGCTTCTGGAAGGAGTTAGCCTTCACTGCTTTCCTTGCAATCGTTAGGCTCTGCGTCATGTTTGTAGGGCCAATTCTCATACAGAGTTTCGTTGATTTCACTTCGGGGAAGAGAAGCTCTGTTTACGAAGGGTATTACCTCGTATTGATTCTCCTCGTTGCTAAATTCACAGAAGTCATGNCCAGAAGCCATGCGAGCTTCAACAGCCAGAAGATTGGGACGCTTATACGGTGCAGCCTCATCCCTTGTTTGTACAAGAAGGGGTTAATGTTGTCCTTCTCTGCTCGACAGGATCATGGTGTTGGCACCATCGTGAATTACATGGCGGTTGATATCCAACAACTCTCTGACATGATGCTTCAGTTGAATGCTGTGTGGACGATGCCATTCCAAATCGGTATTGGCCTTTTTCTTCTTTACAATTGCTTAGGCTCCTCAGCAGTTGCGGCATTTCTTGGACTTCTTGGTGTTCTTGTTTTTGCGGTTATTAGTACCCGTAAGAACAACGGTTTCCAATTCAATGTGATGAAGAATCGTGACTCGAGGATGAAGGCCGTGAATGAGATGCTTAGTTACATGCGGGTGATAAAGTTTCAAGCTTGGGAGGAACACTTCAATGGGAGGATCATGGGTTTTCGTGGGTCAGAGTATTCGTGGCTTTCCAAGTTGATGTTCTCAATTTGTGGCAACTTTGTTGTTATGTGGAGCTCGCCGTTGTTGATATCGACTCTCACGTTTGGTGTGGCTGTTTTGCTTGGGGTAAGGCTTGATGCGGCTACGGTTTTTACTGCGACTACCATCTTCAAGATCTTGCAGGAACCCATTAGGACGTTCCCACAGTCCATGATATCTCTTTCTCAGGCCATGATATCACTGGAGAGGTTGGATAGGTTCATGTCGAGTGTGGAATTGTCGAATGATTCGGTTGAGAGAGAAGAGGAAGGGTGCGGTGGTGGAGAAACGGCAGTGGAGGTTAAAGATGGAATCTTTAGTTGGGATGATGATAAGCAGCACAAGGACTTGAAGAATATTAATTTGGAGATCAAAAAGGGGGAGCTCACAGCAATTGTTGGGACCGTGGGGTCGGGAAAATCATCACTCCTCGCATCAATTCTGGGCGAGATGCGCAAAATTTATGGGAAGGTTCGGGTATGTGGGAGTGTTGCTTATGTAGCACAAACGTCTTGGATTCAGAATGGGACCATTGAGGAAAACATTCTCTTTGGTTTACCAATGGAAAGACAAAAGTANAATGAGGTTATCAAGGCGTGTTGCCTGGAGAAAGATTTGGAAATGATGGATTATGGGGATCAGACAGAGATTGGAGAGCGTGGCATCAACCTGAGCGGTGGCCAGAAGCAAAGGATACAACTTGCCAGGGCTATATATCAAGACTCCGATATTTATCTTCTTGATGACATCTTCAGTGCTGTTGATGCTCATACCGGCTCTGAAATATTTAAGGAATGCGTGAGGGGAGTTCTTAAAGACAAGACCATTATTCTTGTAACACACCAAGTAGATTTCCTACACAATGTGGATCTTATATTAGTGATGAGGGATGGTATGATAGTCCAATCGGGGAAGTATAATGATCTAATAGATTCTGGAATGGATTTTAAAGCACTGGTAGCTGCACATGAGACATCCATGGAACTAGTAGAGCAGGGTGCATTCATACCTGGTGAGAATTTGAACAAACCAGCGAAATCTCCAGAGACAGCTTCTATTTACAAAGGAACCAATGGTGAAAGCAATTCTCNTGACAAGCCCGAATCTGGCAATAATAAGAGTTCTAAACTCATCAAAGAAGAAGAGAAAGAAATTGGCAAAGTGAGCTTACATATCTATAAACTCTACTGCACCGAAGCTTTTGGGTGGTGGGGAATCACAGGAGTGTTGATTCTGTCTTTGTTATGGCAAGGGTCTCTGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAGAGCGTGCCCAAATGTTTAACCCTTCTCTGTTTGTTTCTGTTTATGCAATTATCACTCTTGTTTCGGTTGCTTTTGTAGTAATGAGATGCTACTCCTTTACGTTCTTGGGGCTAAAGACAGCACAAAATTTCTTCNCACAAATTCTTCATAGCATCTTGCATGCCCCCATGTCTTTCTTTGATACTACCCCATCTGGGAGAATTCTAAGTAGGGCATCCACTGATCAAACCAATGTTGATGTTACTCTCCCCATGTTCATGGGAATTGCTATTACCATGTACATTNCAGTGCTCAGCATCTTGATCATCACCTGTCAATACTCTTGGCCAACAATGTTGTTGATAATTCCTCTTGTTTGGTTGAATATATGGTACCGGGTATGCATATGATTTTACCCTGTGTGTTAAATGCTTTGTCCCTTTTTGATTGCCAAAATGTGTAAAACTTTGAATTTTGTTTTAGCTAGTCAAATGCTTATCTTGTATGCTATGTGCGAACACTTCCCTTTCTGTTTTTTGGTCTTGCAGGGTTACTTTCTTGCTTCATCTCGTGAATTAACTCGCCTAGATTCAATTACCAAAGCACCTATTATTCATCANTTCTCTGAAAGCATCGCGGGGGTCATGACAATCCGCGCATTCAGAAAGCAAAAGAGATTTTGTGAGGAAAATCTCAAAAGGGTGAATGCTAATTTGCGAATGGATTTCCACAACTATAGTTCCAATGTGTGGTTGGGGTTACGCTTAGAATTGCTTGGAAGCTTTTTCTTTTGCATTTCTACTATGTTCATGATCATCTTACCCAGCAGCATCATTAAGCCAGAAAATGTTGGGTTATCTCTCTCTTATGGGTTGTCCTTAAATTCCGTCCTGTTCTGGTGCGTATTCCAGAGCTGTATCATCGAAAACAAATTGGTATCTGTTGAAAGGATAAAGCAGTTTACAAATATTCCATCAGAACCAGCATGGAAGATCAAGGATCATGTGCCTCCTTCAAATTGGCCCGGTCAAGGCAATGTAGATATCAAAGACTTGCAGGTCAGATATCGTCCAAATAGTCCTTTGGTTCTTAAAGGCATTACATTAAGCATTAGTGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACTGGGAGCGGAAAATCAACTCTAATTCAAGTTTTGTTTAGGCTGGTGGAACCTTCGGGAGGGAAAGTAATAGTAGATAGTATTGACATATCCGTGTTGGGGCTTCATGATCTCAGATCAAGGTTTGGTATCATTCCTCAGGAGCCAGTCCTTTTTGAAGGAACTGTTAGAAGCAACATTGATCCAACCGGACAGTATACAGATGAAGAGATATGGAAGCGAAGCCGGCTCTTGTTTATGGATGAGGCAACTGCTTCTGTTGATTCTCAAACTGATGGGCGTGTGAAAGAATTTGATAAGCCCTCCAATTTGCTTCAGAGGCCATCTCTCTTTGGGGCATTAGTTCANGAAATATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04892	610	7959	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006810 transport

GO:0055085 transmembrane transport

cellular_component
GO:0016021 integral component of membrane

molecular_function

GO:0005524 ATP binding

GO:0016887 ATPase activity

GO:0042626 ATPase activity, coupled to transmembrane movement of substances

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004892s00040930.1	PF00664.18	ABC_membrane	34	152	5.00E-11
Glyur004892s00040930.1	PF00005.22	ABC_tran	221	312	1.80E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	8.551
SRR1783600	control	8.381
SRR1783602	moderate drought stress	1.536
SRR1811619	moderate drought stress	1.537

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.128
DRR006520	Root Summer glycyrrhizin high producing strain	1.937
DRR006521	Root Winter glycyrrhizin high producing strain	0.066
DRR006522	Root Winter glycyrrhizin high producing strain	0.047
DRR006523	Root Summer glycyrrhizin low producing strain	1.603
DRR006524	Root Summer glycyrrhizin low producing strain	1.720
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.291
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.438

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.432
SRR2868004	Drought Stress (root)	8.270
SRR2967015	Control (root)	6.811

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	8.115
SRR9715740	Leaf	1.307
SRR9715741	Leaf	1.944
SRR9715739	Root	0.873
SRR9715742	Root	11.366
SRR9715743	Root	9.132

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.060
SRR8749028	MeJA induced 9h	0.065
SRR8749029	MeJA induced 9h	0.094
SRR8749030	Uninduced	0.108
SRR8749031	Uninduced	0.125
SRR8749032	Uninduced	0.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.657
SRR8400027	Control - Root	19.113