Gene detail information of Glyur004890s00046809 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G25450.1 | 4.00E-42 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_007140617.1 | 5.86E-81 | hypothetical protein PHAVU_008G127200g [Phaseolus vulgaris] |
| Swissprot | tr|Q9SKK4|GSL_ARATH | 6.00E-49 | Probable 2-oxoacid dependent dioxygenase |
| trEMBL | tr|V7B813|V7B813_PHAVU | 2.00E-81 | Uncharacterized protein {ECO:0000313|EMBL:ESW12611.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04890 | 3463 | 6994 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004890s00046809.1 | PF14226.1 | DIOX_N | 64 | 171 | 2.00E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.458 |
| SRR1783600 | control | 0.488 |
| SRR1783602 | moderate drought stress | 0.395 |
| SRR1811619 | moderate drought stress | 0.277 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.530 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.437 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.182 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.065 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.284 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.256 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.897 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.761 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.698 |
| SRR2868004 | Drought Stress (root) | 2.469 |
| SRR2967015 | Control (root) | 8.932 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.279 |
| SRR9715740 | Leaf | 17.540 |
| SRR9715741 | Leaf | 22.698 |
| SRR9715739 | Root | 0.133 |
| SRR9715742 | Root | 2.599 |
| SRR9715743 | Root | 1.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.251 |
| SRR8749029 | MeJA induced 9h | 0.118 |
| SRR8749030 | Uninduced | 29.220 |
| SRR8749031 | Uninduced | 22.171 |
| SRR8749032 | Uninduced | 46.477 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 4.211 |
| SRR8400027 | Control - Root | 1.311 |