Gene detail information of Glyur004885s00042049 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G20200.1 | 1.00E-08 | nucleoporin-related |
| NR | XP_004488415.1 | 1.29E-57 | PREDICTED: uncharacterized protein LOC101507132 [Cicer arietinum] |
| trEMBL | tr|A0A072V8X9|A0A072V8X9_MEDTR | 2.00E-47 | Nucleoporin-like protein {ECO:0000313|EMBL:KEH38489.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04885 | 40 | 8196 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 25.166 |
| SRR1783600 | control | 22.395 |
| SRR1783602 | moderate drought stress | 29.158 |
| SRR1811619 | moderate drought stress | 28.209 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.150 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.095 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.911 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.015 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.232 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.928 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.351 |
| SRR2868004 | Drought Stress (root) | 11.737 |
| SRR2967015 | Control (root) | 11.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.159 |
| SRR9715740 | Leaf | 5.214 |
| SRR9715741 | Leaf | 5.884 |
| SRR9715739 | Root | 7.978 |
| SRR9715742 | Root | 17.254 |
| SRR9715743 | Root | 16.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.029 |
| SRR8749028 | MeJA induced 9h | 15.211 |
| SRR8749029 | MeJA induced 9h | 2.326 |
| SRR8749030 | Uninduced | 2.265 |
| SRR8749031 | Uninduced | 1.857 |
| SRR8749032 | Uninduced | 1.336 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.552 |
| SRR8400027 | Control - Root | 14.815 |