Gene detail information of Glyur004862s00042761 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G53600.1 | 1.00E-11 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| NR | XP_004488659.1 | 1.00E-23 | PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like [Cicer arietinum] |
| Swissprot | tr|Q9C8L6|PPR80_ARATH | 2.00E-13 | Pentatricopeptide repeat-containing protein At1g53600, mitochondrial (Precursor) |
| trEMBL | tr|G7IJC7|G7IJC7_MEDTR | 1.00E-21 | PPR containing plant-like protein {ECO:0000313|EMBL:AES66478.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04862 | 9855 | 10055 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004862s00042761.1 | PF13041.1 | PPR_2 | 5 | 53 | 3.10E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 105.879 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 98.912 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.882 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.728 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.550 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.538 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.057 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.981 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.464 |
| SRR2868004 | Drought Stress (root) | 0.119 |
| SRR2967015 | Control (root) | 0.571 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.128 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.119 |
| SRR8749031 | Uninduced | 0.268 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.419 |
| SRR8400027 | Control - Root | 0.970 |