Gene detail information of Glyur004856s00045263 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69850.1 | 3.00E-76 | nitrate transporter 1:2 |
| NR | KHN01167.1 | 1.08E-127 | Nitrate transporter 1.2 [Glycine soja] |
| COG | NP_870446.1 | 1.00E-07 | oligopeptide transporter, kidney isoform [Rhodopirellula baltica SH 1] |
| Swissprot | tr|Q8H157|PTR19_ARATH | 4.00E-112 | Protein NRT1/ PTR FAMILY 4.6 |
| trEMBL | tr|I1J5K4|I1J5K4_SOYBN | 3.00E-127 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G04900.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04856 | 928 | 9697 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004856s00045263.1 | PF00854.16 | PTR2 | 102 | 216 | 5.10E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 45.757 |
| SRR1783600 | control | 46.156 |
| SRR1783602 | moderate drought stress | 51.638 |
| SRR1811619 | moderate drought stress | 52.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.019 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.266 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.798 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.671 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 53.715 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 54.415 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.723 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.774 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.569 |
| SRR2868004 | Drought Stress (root) | 20.789 |
| SRR2967015 | Control (root) | 15.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.300 |
| SRR9715740 | Leaf | 17.052 |
| SRR9715741 | Leaf | 15.215 |
| SRR9715739 | Root | 6.830 |
| SRR9715742 | Root | 14.346 |
| SRR9715743 | Root | 14.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.215 |
| SRR8749028 | MeJA induced 9h | 1.043 |
| SRR8749029 | MeJA induced 9h | 0.224 |
| SRR8749030 | Uninduced | 0.728 |
| SRR8749031 | Uninduced | 0.069 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 9.393 |
| SRR8400027 | Control - Root | 13.152 |