Gene detail

Gene detail information of Glyur004853s00041810

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G37460.1	9.00E-64	nodulin MtN21 /EamA-like transporter family protein
NR	XP_007144467.1	1.50E-100	hypothetical protein PHAVU_007G158600g [Phaseolus vulgaris]
Swissprot	tr\|Q9ZUS1\|WTR13_ARATH	3.00E-77	WAT1-related protein At2g37460
trEMBL	tr\|V7BIV3\|V7BIV3_PHAVU	6.00E-101	Uncharacterized protein {ECO:0000313\|EMBL:ESW16461.1}

Sequence

Transcript Sequence

>Glyur004853s00041810.1
ATGGAGAACCACCAAATACAAAATTGGTTCGAAAGAGCAAAGCCATTTGTTGCTGTCGTGTTTGTGCAGTTTGGATATGCAATCATGGATGTTCTATCCAAGGCTGCAATGAACAAAGGGATGAGCAATTATGTATTTGTTGTGTATCGCCATGCTGTTGCATTCTTTGTCATAGCCCCTTTTGCTCTGTATTTTGACAAGAAAGTGAGGCCAAAAATGACAATTTCAATCTTCATCAAGATAGTTGTGCTCGGCTTGCTAGAGCCAGTTATTGACCAGAATTTGTATTTTTTGGGGATGAANTACACAACAGCATCCTTTGCAGTTGCCATGACCAATATCCTTCCAGCCATTACCTTTATTTTGGCTTGCATTCTTAGGCTTGAGAAGATAAAAATAAGAAGTATACGCAGCCAAGCAAAGATAGTGGGAACTCTAGCAACTGTTTCAGGTGCTATGGTCATGACAATAATTAAAGGCCCATTACTTTTTGGGACACATGTAGGCAATAGTCACAACCAGCACAATAATGGGACAAATATTCAACATACAATCGCGGATCCGTAATGATCATAGTAGGGTGTTTTAGTTGGGCTTGCTTTGTGGTCCTCCAAGCTATTACCCTTAAAACCTACCCTGCAACACTCTCTCTGGCGTCATGGATATGCCTATTGGGCACAATTGAAGGTGCAGCAGTGGCCATGGTTATGGAAAGGGGCAACCCTTCAGTTTGGTCTCTAAAATGGGATATGAGACTGCTTTCTGCTGTCTACGCTGGCATAGTATGTTCAGGATTGGTTTATTACTTGCAAGGAGTAGTGATGAAAACTAGAGGCCCAGTTTTCGTAACAGCATTTAATCCCTTGTGCATGGTAATTGTTGCAATCATGGGTTACTTCATTCTGGCTGAACAAACATTCCTTGGAAGGGTGATAGGTGCAGTGATAATTTGTTTGGGCCTGTACCTTGTGGTGTGGGGAAAAAGCAAAGATTATTACAACCCACCAAATCCAATTATTCCACAAGAGCCTGTATTGCCAGCTAAGCAAACTGCAAACGAGGGCAATGCTAGGAATGAGTGTTGCACTCACGAGGTCATCACTATTCAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04853	73	4565	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component

GO:0016020 membrane

GO:0016021 integral component of membrane

molecular_function
GO:0022857 transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004853s00041810.1	PF00892.15	EamA	26	136	5.90E-13
Glyur004853s00041810.2	PF00892.15	EamA	7	136	6.40E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.063
SRR1783600	control	0.066
SRR1783602	moderate drought stress	0.380
SRR1811619	moderate drought stress	0.447

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.837
DRR006520	Root Summer glycyrrhizin high producing strain	5.429
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	9.862
DRR006524	Root Summer glycyrrhizin low producing strain	10.898
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.124
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.082

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.550
SRR2868004	Drought Stress (root)	5.203
SRR2967015	Control (root)	5.327

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.053
SRR9715740	Leaf	0.180
SRR9715741	Leaf	0.161
SRR9715739	Root	0.547
SRR9715742	Root	2.414
SRR9715743	Root	1.860

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.038
SRR8400027	Control - Root	2.577