Gene detail information of Glyur004842s00039906.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G28730.1 | 0 | high mobility group |
| NR | XP_003517023.1 | 0 | PREDICTED: FACT complex subunit SSRP1-like [Glycine max] |
| Swissprot | tr|O04235|SSRP1_VICFA | 0 | FACT complex subunit SSRP1 |
| trEMBL | tr|I1J7R6|I1J7R6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G33240.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04842 | 7271 | 11986 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HMG |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004842s00039906.1 | PF03531.9 | SSrecog | 67 | 214 | 1.20E-60 |
| Glyur004842s00039906.1 | PF03531.9 | SSrecog | 218 | 253 | 2.90E-12 |
| Glyur004842s00039906.1 | PF08512.7 | Rtt106 | 309 | 400 | 4.00E-22 |
| Glyur004842s00039906.1 | PF00505.14 | HMG_box | 530 | 597 | 3.60E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.229 |
| SRR1783600 | control | 11.317 |
| SRR1783602 | moderate drought stress | 10.691 |
| SRR1811619 | moderate drought stress | 9.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.998 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.841 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 10.226 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.994 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.860 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.965 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.638 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 7.894 |
| SRR2868004 | Drought Stress (root) | 7.306 |
| SRR2967015 | Control (root) | 10.186 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.772 |
| SRR9715740 | Leaf | 2.620 |
| SRR9715741 | Leaf | 2.134 |
| SRR9715739 | Root | 1.269 |
| SRR9715742 | Root | 6.843 |
| SRR9715743 | Root | 7.053 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.627 |
| SRR8749028 | MeJA induced 9h | 8.351 |
| SRR8749029 | MeJA induced 9h | 10.743 |
| SRR8749030 | Uninduced | 4.270 |
| SRR8749031 | Uninduced | 3.964 |
| SRR8749032 | Uninduced | 4.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.036 |
| SRR8400027 | Control - Root | 14.802 |