Gene detail

Gene detail information of Glyur004831s00041787

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06600.3	1.00E-36	ubiquitin-specific protease 12
NR	KHN43578.1	9.46E-162	Ubiquitin carboxyl-terminal hydrolase 12 [Glycine soja]
Swissprot	tr\|Q9FPT1\|UBP12_ARATH	5.00E-38	Ubiquitin carboxyl-terminal hydrolase 12
trEMBL	tr\|K7KG70\|K7KG70_SOYBN	1.00E-161	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA03G36450.2}

Sequence

Transcript Sequence

>Glyur004831s00041787.1
ACTTGACTTCACTTTCATTCATTCTACCTCCTTGCAACCATTCTACTTATTTGCTCCTTTTCTTTCGTCCCTGGAAATTCTCACATTCATGACATACTCAGAACGTTGGTGGCAACCCATTGAGGAGCTTGTTGGGCAAATATATCTCGGATGTAAGAATGGACGTTCAGAAGGGAATCTCCAGTATTAACTTTGAGACATTCACGTGGAAAATTGAAAATTTCTCAAAACAAAACATCAAGAGTCTACNATCCAAGGCTTTTCGAATCGGAGGTTATAAATGGCGGATCCTGTTGCATCCAATAAGGAAAAATGTTGACCATTTTTCATTATATTTGATGGTTGCGGATTCTTTGCCACCGTATGGATGGAGCAGAAACGCGTATTTCAAGTTGATTCTAATTAATCAGGTGGATGCCAACAAGTCGGTTGTAAAGGGTTATCTTGTGAACGACACGTGCATCATTGAAGCTCATGTTTGTGTCTCCGATCTTAGTACTACCATTCAAGCTGACAACTTGAATAGAATCACTCCAACCAATGACTCTAAACTAGGCGATGATCAAGCCACAGGACAGATCAGTCAGAGACAAAAAGAATCCTCACAACAGGAAGATGATAAAGAAACAGAAACATCAGAAGAGAGTGAGTCACTTAGCAGCAGCAGTTCAGGAACATGTGAGTCTAGTCAGACAGAAACATCCACATCAGATACGACACTAGGAGAGCTCCTAGATTTGGAGAGTTTAGGAACAGAAGAAGCAGCTTTTGTTCCACTGTTGGAGGAGGCATGCACTTGGCATCCTTCCCTGATAAGGAGCCAGAGTAATAGAACTAGAAGATTCAAATTATGGGCATTCACGTCTTTGGGCCAAGTTCTGCACATCCTCAAGACAAGTAAAGTGAAGGATATGAATGAGGAAACCAGCAATCACCTTCAGGGTTTATGGGAGGAGCTTGTTAAGGCCTCTGGATTCAACTTGGCATGGCTTGAGCCTTATGTTGAATCTGCATTGGGTGTAAAAGCCCATTTGGAAAAGACAGCATCAGTGAATAGACTGAAGGATAGTGTGGTTGCTTTGGAGATTAGAATGAAGAAACTGAGGGGAGAATTGGTTGCTGCTGAAGCTGAGNTTGAGGTGGCAAGGAGAGCCTTGGCTGAGGCAAGGAAAGATTACATAGAGATTGATTTGAATTCTGAATTGGGTTATTCCATGAGGATTATTCTATATCCAGAAAACTTGTCAATTTATTTGGAAGCTGTGCAATCTGCTATTATGTCTACCGGATGGAGCAGACATGTGACATTCCGGTTGATTGTATGCAATCAGTTCGATAGCAACATGACAATCACAAAAGGTTTTGAAGAAATGGAGCTTCAACAATCGAGAGTTGATGTGTTTGAGAAAGTCACGTGGAAGATTGAGAACTTCTCTCGTCTGAACAACGAAAAGCTTTACTCTGAGCCTGTCATCCTCGGCGGCTATCCATGGAGGATTNTTCTGTATCCAAGAGGGAACAAGGTAGAGTACTTGTCAATTTATTTGGATGCTGTGCAATCTGCTNATATGTCTACGGGGTGGAGCAGAGATGTGACATTCCGGTTGTTTGTATTTAATCAGGTCGATGACAACATGACAATCAGAAGAGAGACTGACCACGAGTTCAATGCAGAGGAGAGTGACTGGGGTTTCAAATCTTTAATACCTTTAGCCAAATTTCGTGATCCTAGTAAGGGGTTTCTTGTCGACGATGTTTGTATTGTTGGTGTAGAGGTTTCTGTTCATAAGTCAAGACATGAGAATCAAGTGAATCAAGCAGCTAGCTTAACTGTTTCCCCAATGGATTTGTTCCCGGCCTCAATTGGCGAGCTTATGGATTTCAGGGGTTTAGGACAAATAGAAAAAGCTTTTGTTCCACTACTGGAGGAAGTATGTTCTCAACATCCATCACTTATTGAGTGCCAGCAGAAGAGAACTCGCAAGTTTACTGAATGGGCATTCACTGCTTTGGGCAGGGTTCTTTATTTCCTTAAGACTAGAAAGGGGAAAGATATGAATGACCTAGCTTGTGAGGATCTNCAAATTTTATGGGAAGAACTTGAGACATGTAGATTTGATCTGACTTGGTTAGAGCCCCATGTCCAANCCGCCTTATGCATGAAAAGTTATGGGGAGAAAGCGATGGAGGTACAAAAGCTGAAGGAGAATGTGGTAGCTCTAGAGTTGGAAGTGGAGAGCCTCAAGGCGAAGTTGGTTACTACTGAGGAAAATCTTGATGCAGCAAGAGACTTTTTGAATGCAAAAGACTTCAAAGAGATAGATTTGGATGCTGAACTAGGATATGGGATACCATAGGACCTATTGCTAAATATGCGTGTAGATATATGGATGGATTGCGGTGGCTTAAATGTTTATCTTAAGATTTTGATATGAAAATGTATTTTCTGACCTCATTTTAGTTTTTGGTTTAAAAGTTTCATACATTATGAGGGTCTAAGCTATGCTGGCTAACTTGGTTTTTCAACTATCCAGATTAGTCCCCTGAATG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04831	3937	11141	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004831s00041787.1	PF00917.21	MATH	19	84	0.00033
Glyur004831s00041787.1	PF00917.21	MATH	422	542	5.70E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.673
SRR1783600	control	0.525
SRR1783602	moderate drought stress	0.634
SRR1811619	moderate drought stress	0.565

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.622
DRR006520	Root Summer glycyrrhizin high producing strain	0.489
DRR006521	Root Winter glycyrrhizin high producing strain	0.590
DRR006522	Root Winter glycyrrhizin high producing strain	0.566
DRR006523	Root Summer glycyrrhizin low producing strain	1.186
DRR006524	Root Summer glycyrrhizin low producing strain	1.016
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.502
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.622

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.210
SRR2868004	Drought Stress (root)	2.226
SRR2967015	Control (root)	2.338

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.847
SRR9715740	Leaf	11.491
SRR9715741	Leaf	13.902
SRR9715739	Root	0.402
SRR9715742	Root	1.386
SRR9715743	Root	1.056

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.379
SRR8749028	MeJA induced 9h	0.590
SRR8749029	MeJA induced 9h	0.988
SRR8749030	Uninduced	0.137
SRR8749031	Uninduced	0.082
SRR8749032	Uninduced	0.126

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.526
SRR8400027	Control - Root	1.687