Gene detail information of Glyur004823s00043162 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G08350.1 | 1.00E-28 | global transcription factor group A2 |
| NR | XP_003526672.1 | 6.22E-42 | PREDICTED: putative transcription elongation factor SPT5 homolog 1-like isoform X1 [Glycine max] |
| Swissprot | tr|Q9STN3|SPT51_ARATH | 1.00E-32 | Putative transcription elongation factor SPT5 homolog 1 |
| trEMBL | tr|K7KUN4|K7KUN4_SOYBN | 2.00E-42 | Transcription elongation factor SPT5 {ECO:0000256|PIRNR:PIRNR036945} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04823 | 11809 | 12054 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 61.538 |
| SRR1783600 | control | 60.447 |
| SRR1783602 | moderate drought stress | 70.831 |
| SRR1811619 | moderate drought stress | 68.642 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 38.464 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 41.096 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.056 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 42.904 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 45.245 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 42.039 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 24.880 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 20.654 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 97.578 |
| SRR2868004 | Drought Stress (root) | 112.033 |
| SRR2967015 | Control (root) | 96.433 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 92.534 |
| SRR9715740 | Leaf | 84.354 |
| SRR9715741 | Leaf | 96.227 |
| SRR9715739 | Root | 23.624 |
| SRR9715742 | Root | 49.019 |
| SRR9715743 | Root | 46.504 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 98.149 |
| SRR8749028 | MeJA induced 9h | 63.505 |
| SRR8749029 | MeJA induced 9h | 119.354 |
| SRR8749030 | Uninduced | 135.966 |
| SRR8749031 | Uninduced | 150.609 |
| SRR8749032 | Uninduced | 156.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.035 |
| SRR8400027 | Control - Root | 54.899 |