Gene detail information of Glyur004816s00045146 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G34470.1 | 1.00E-34 | Protein of unknown function (DUF803) |
| NR | KEH35645.1 | 3.57E-58 | magnesium transporter NIPA protein [Medicago truncatula] |
| Swissprot | tr|Q9LNK7|NIPA3_ARATH | 9.00E-41 | Probable magnesium transporter NIPA3 |
| trEMBL | tr|A0A072VBT4|A0A072VBT4_MEDTR | 1.00E-58 | Magnesium transporter NIPA protein {ECO:0000313|EMBL:KEH35645.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04816 | 5132 | 10339 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004816s00045146.1 | PF05653.9 | Mg_trans_NIPA | 1 | 98 | 4.20E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.442 |
| SRR1783600 | control | 1.621 |
| SRR1783602 | moderate drought stress | 5.588 |
| SRR1811619 | moderate drought stress | 5.550 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.666 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.666 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.427 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.390 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.563 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.987 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 2.551 |
| SRR9715740 | Leaf | 2.530 |
| SRR9715741 | Leaf | 3.187 |
| SRR9715739 | Root | 1.102 |
| SRR9715742 | Root | 1.273 |
| SRR9715743 | Root | 0.882 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.073 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.041 |
| SRR8400027 | Control - Root | 1.899 |