Gene detail information of Glyur004792s00043673 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42740.1 | 7.00E-60 | ribosomal protein large subunit 16A |
| NR | XP_008225318.1 | 1.50E-89 | PREDICTED: 60S ribosomal protein L11 [Prunus mume] |
| COG | YP_004616289.1 | 3.00E-32 | 50S ribosomal protein L5 [Methanosalsum zhilinae DSM 4017] |
| Swissprot | tr|P46287|RL11_MEDSA | 1.00E-90 | 60S ribosomal protein L11 |
| trEMBL | tr|Q8GTE2|Q8GTE2_CICAR | 2.00E-89 | Ribosomal protein RL5 {ECO:0000313|EMBL:CAD56220.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04792 | 8176 | 10739 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004792s00043673.1 | PF00673.16 | Ribosomal_L5_C | 95 | 194 | 5.60E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 138.875 |
| SRR1783600 | control | 140.187 |
| SRR1783602 | moderate drought stress | 117.961 |
| SRR1811619 | moderate drought stress | 114.574 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 139.503 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 136.052 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 73.157 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 73.862 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 94.055 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 95.362 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 37.232 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 36.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 187.858 |
| SRR2868004 | Drought Stress (root) | 129.240 |
| SRR2967015 | Control (root) | 123.068 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 71.994 |
| SRR9715740 | Leaf | 57.438 |
| SRR9715741 | Leaf | 54.440 |
| SRR9715739 | Root | 185.748 |
| SRR9715742 | Root | 133.133 |
| SRR9715743 | Root | 149.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 476.956 |
| SRR8749028 | MeJA induced 9h | 171.996 |
| SRR8749029 | MeJA induced 9h | 382.393 |
| SRR8749030 | Uninduced | 64.070 |
| SRR8749031 | Uninduced | 39.846 |
| SRR8749032 | Uninduced | 51.840 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 148.173 |
| SRR8400027 | Control - Root | 137.111 |