Gene detail

Gene detail information of Glyur004782s00041777

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01150.1	5.00E-38	Protein of unknown function (DUF674)
NR	XP_003551534.2	2.43E-174	PREDICTED: uncharacterized protein LOC100814631 [Glycine max]
trEMBL	tr\|A0A072TZK3\|A0A072TZK3_MEDTR	4.00E-159	DUF674 family protein {ECO:0000313\|EMBL:KEH22914.1}

Sequence

Transcript Sequence

>Glyur004782s00041777.1
ATGGCTGCTGCTTCTACTCCTGCTCAAACTTCTACTGCTCAGGCAGAAGAGCAAGTGTCNTTGAAACTTGTGGTGAACAAAGAGACAAACAGAGTCTTGTTTGCTGAGGCAGGGAAGGACTTTGTGGACGTTCTCTGCAGCTTCTTGACACTGCCATTAGGAACCATCGCCAGACTGGTAGGGAAGGAGTCAAACATGGGACCGGTCACAGTTGGCTGTCTGAACTCACTCTATCAAAGCGTGGTAGATCTCGACAAAGAGTGTCTGTGGACTGAGACCAGCAAAGAATTGCTGTTNCATCCGCGGAACTCGTCCGAAGGTTATTGTAGCACTCTTGAACTCAACATTGATGACACCGAGCCCCAAAAGTACTTCATATGTTCCAGCGGTGGAACCAGCCACGGTTCTATCTCTGCCACAAGTGGAACGAGTTGTAGGATTCAGGGGTGTAGGTGTCTTTTGACCAGCTCAGTTTCCCTGAAACATTTCAGCAAAGGATTTGTTAACAGTGCTGCGACTTTTATCATTACTGACGAACTGATTGTCATGCCAAACTCTCTGGATTATACAAGCTTTGGTCTGCTCCAGAAATTGGGAATAAAAAGCCCAAGTTCAGTGCTAGATCTGCTAAAGTGTTCTCTGCTTTCCAAGTCAACTCTGACAGATTTGTTTCTAGGAAAGAAAGCTTTGCTCGAGGGGTGGAGGTTTTTCTCTTATGGTGTTAAAAACAATAGTAGCAGTAGTAGTATCCAAATCAAGCTGAAGCTAGTTATAAGAAAATCAGATGGTAAGATATTATATGCACAGGGGGAACAAGATTTTGCTGACTTGCTTTTAAGTTTTCTGACGTTTCCTTTGGGCGGAGTTGTGCTTAAGTTGGAAGGAAATTGTTTTGCGGGCTGCATCGATGGATTGTATATGAGCATCACTGATTTAAATGTAAAAAAATATATGATGTCAATTGAAGCAAAGAACAGACTTTTTGATCCTCACCTGGCCCCAGAGTTCAACTCAAGCAATCTGATATTACCAATTTTCGAGCCATGTGTTTTGCAATATTATTGTTTTAGTAGTGATTCCACTACTCATGTTCAAATTTTCAAAGATGGTGAACATGAGAGTGGGGTTGGGAATTTCAGACTAATGACACTAGTTAATCCCAAATCAGCAACCGGAAGTCATGGCGGTTATGTCAAGGGACCAGCAATGTACCTTGTCACAGATGATTTGGTCGTGGCACCTCTGTCTCCAATTTCAGCTTTAGATTTACTTAACCGTTTGAAAACTCCTTTTAATGACCTGAAGGAAAAGGTGGTCACCATTGGCGTCAAGGAGACAAACAGAGTCTTGTTTGCTGAGGCAGGGAAGGACTTTGTGGACGTTCTCTGCAGCTTCTTGACAATGCCATTAGGAACCATCGCCAGACTGGTAGAGAAGGAGTCAAACATGGGACCAGTCACAGTTGGTTGTCTGAACTCACTCTATCGAAGTGTGGCAGATCTGGACGAAGAGTGCCTGTGGACTGAGACCAGCAAAGAATTGTTGTTGCAACCGCGGAACTCGTCCGAAGGTTATTGTAGCACTCTTGAACTCAACATTGATGACACCCAGCCCCAAAAGTACTTCATATGTTCCAACTATGGAATCGGCCACAGTTCGATCTCTGCCACAAGTGGAGCGAGTTGTGGGTTGTGTGGGAGGAGTTCTATGAACCGCGCAATTTCGGTGAAGCACTTCAGCAAAGGATTTGTTAACAGTGCTGCGACTTTTATCATTACTGACGAACTGATTGTCATGCCAGACTCTCTGGATTATGCAAGCTTTGGTCTGCTCCAGAAATTAAGAGTTAAAAACCCAAGTTCAGTGAAGGAAATGATTGTGAATGTCAATAAGCAAAAGGGACCTGAATCTGCCATGGGTACTACTNGTCGTATCCAAATCAAGCTGAAGCTAGTTATAAGAAAATCAGATGGCAAGATATTATTTGCCCAGGGTGAACAAGATTTTGCAGACTTGCTTTTAAGTTTTCTGACGTTTCCGTTGGGAGGAGTTGTGCGTAAGTTGGGAGGAAATTGTTTTGTGGGCTGCATCGATGGATTGTATATGAGCATCACTGATTTAAATGGAAACAAATATATGATGTCAATTGAAGCAAAGAACAGACTTATTGATCCTCACCTGGCCCCAGAGTTCAACTCAAGCAATCTGATATTACCAATTATCGAGCCATGTGTTTTGCAATATTATTGTTTTAGTAGTGATTCCACTACTCATGTTCAAATTTTCAAAGCCGGTGAACGTAAGAGTGAGGTGGGGAATTTCAGACTAATGAGCCTATCTAATCCCAAATCAGCAACCGGAAGTCATGGCGGTTATGTCAAGGGACCAGCAATGTACCTTGTCACAGATGATTTGGTCGTGGCTCCTCTGTCTCCAATTTCAGCTTTAGATTTACTTAACCGTTTGAAAACTCCTATTAATGACCTGAAGGAAAAGGTGGTCACCATTGGCGTCAAGGAGGTAAGAAAGAGTAAAAACCTTAGTGATTCCACTACTCATGTTCAAATTTTCAAAGCCGGTGAACGTAAGAGTGAGGTGGGGAATTTCAGACTAATGAGCCTATCTAATCCCAAATCAGCAACCGGAAGTCATGGCGGTTATGTCAAGGGACCAGCAATGTACCTTGTCACAGATGATTTGGTCGTGGCTCCTCTGTCTCCAATTTCAGCTTTAGATTTACTTAACCGTTTGAAAACTCCTATTAATGACCTGAAGGAAAAGGTGGTCACCATTGGCGTCAAGGAGTGTCTCAGCATATTGAAGGCATCTCTGACCTCAACATCTGCTCTAACAAATGGTCTCAGTCACTTGTTAACCGAAGTCAAAGAGGAGAAATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04782	800	5222	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004782s00041777.1	PF05056.7	DUF674	14	445	1.40E-70
Glyur004782s00041777.1	PF05056.7	DUF674	445	630	3.60E-43
Glyur004782s00041777.1	PF05056.7	DUF674	641	840	6.60E-23
Glyur004782s00041777.1	PF05056.7	DUF674	872	935	1.40E-06
Glyur004782s00041777.2	PF05056.7	DUF674	14	445	1.50E-70
Glyur004782s00041777.2	PF05056.7	DUF674	457	653	9.20E-47
Glyur004782s00041777.2	PF05056.7	DUF674	663	863	6.20E-23
Glyur004782s00041777.2	PF05056.7	DUF674	895	958	1.50E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.728
SRR1783600	control	1.963
SRR1783602	moderate drought stress	2.523
SRR1811619	moderate drought stress	2.533

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.022
DRR006520	Root Summer glycyrrhizin high producing strain	4.846
DRR006521	Root Winter glycyrrhizin high producing strain	0.081
DRR006522	Root Winter glycyrrhizin high producing strain	0.105
DRR006523	Root Summer glycyrrhizin low producing strain	3.374
DRR006524	Root Summer glycyrrhizin low producing strain	3.348
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.812
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.788

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.982
SRR2868004	Drought Stress (root)	7.362
SRR2967015	Control (root)	6.299

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.008
SRR9715740	Leaf	0.411
SRR9715741	Leaf	0.270
SRR9715739	Root	0.441
SRR9715742	Root	1.017
SRR9715743	Root	0.989

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.012
SRR8749028	MeJA induced 9h	0.011
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.013
SRR8749032	Uninduced	0.029

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.248
SRR8400027	Control - Root	1.560