Gene detail information of Glyur004779s00045424 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34930.1 | 7.00E-41 | disease resistance family protein / LRR family protein |
| NR | KHN02657.1 | 0 | LRR receptor-like serine/threonine-protein kinase GSO1 [Glycine soja] |
| COG | YP_004775215.1 | 6.00E-24 | RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745] |
| Swissprot | tr|Q9M0G7|PXL2_ARATH | 8.00E-44 | Leucine-rich repeat receptor-like protein kinase PXL2 (Precursor) |
| trEMBL | tr|K7LUE3|K7LUE3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G14530.2} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04779 | 6141 | 8105 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004779s00045424.1 | PF13504.1 | LRR_7 | 123 | 135 | 4.3 |
| Glyur004779s00045424.1 | PF00560.28 | LRR_1 | 148 | 169 | 0.42 |
| Glyur004779s00045424.1 | PF12799.2 | LRR_4 | 177 | 212 | 9.30E-09 |
| Glyur004779s00045424.1 | PF00560.28 | LRR_1 | 249 | 266 | 0.041 |
| Glyur004779s00045424.1 | PF13516.1 | LRR_6 | 277 | 291 | 0.4 |
| Glyur004779s00045424.1 | PF13855.1 | LRR_8 | 324 | 360 | 8.40E-07 |
| Glyur004779s00045424.1 | PF00560.28 | LRR_1 | 499 | 516 | 0.65 |
| Glyur004779s00045424.1 | PF00560.28 | LRR_1 | 522 | 541 | 0.073 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.007 |
| SRR1783600 | control | 0.031 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.272 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.269 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.311 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.644 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.368 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.104 |
| SRR2868004 | Drought Stress (root) | 0.436 |
| SRR2967015 | Control (root) | 0.211 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.273 |
| SRR9715740 | Leaf | 0.317 |
| SRR9715741 | Leaf | 0.792 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.171 |
| SRR8749028 | MeJA induced 9h | 0.157 |
| SRR8749029 | MeJA induced 9h | 0.018 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.005 |
| SRR8400027 | Control - Root | 0.025 |