Gene detail information of Glyur004770s00038803.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G18280.2 | 9.00E-130 | tubby like protein 2 |
| NR | XP_003517227.1 | 0 | PREDICTED: tubby-like F-box protein 5-like isoform X1 [Glycine max] |
| Swissprot | tr|Q6Z2G9|TLP5_ORYSJ | 3.00E-177 | Tubby-like F-box protein 5 |
| trEMBL | tr|I1J8U3|I1J8U3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G37940.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04770 | 6116 | 8943 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | TUB |
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004770s00038803.1 | PF00646.28 | F-box | 55 | 107 | 5.50E-10 |
| Glyur004770s00038803.1 | PF01167.13 | Tub | 119 | 398 | 1.20E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 23.110 |
| SRR1783600 | control | 22.616 |
| SRR1783602 | moderate drought stress | 35.626 |
| SRR1811619 | moderate drought stress | 34.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 23.538 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.089 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.686 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.308 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.492 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.556 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.899 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.817 |
| SRR2868004 | Drought Stress (root) | 20.648 |
| SRR2967015 | Control (root) | 28.762 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 16.408 |
| SRR9715740 | Leaf | 20.997 |
| SRR9715741 | Leaf | 16.473 |
| SRR9715739 | Root | 49.117 |
| SRR9715742 | Root | 35.527 |
| SRR9715743 | Root | 35.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.204 |
| SRR8749028 | MeJA induced 9h | 19.836 |
| SRR8749029 | MeJA induced 9h | 13.342 |
| SRR8749030 | Uninduced | 11.513 |
| SRR8749031 | Uninduced | 8.300 |
| SRR8749032 | Uninduced | 13.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 61.508 |
| SRR8400027 | Control - Root | 55.438 |