Gene detail

Gene detail information of Glyur004762s00047508.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G30960.1	0	SOS3-interacting protein 3
NR	XP_007138415.1	0	hypothetical protein PHAVU_009G206900g [Phaseolus vulgaris]
COG	YP_007468874.1	6.00E-37	serine/threonine protein kinase [Desulfocapsa sulfexigens DSM 10523]
Swissprot	tr\|O65554\|CIPK6_ARATH	0	CBL-interacting serine/threonine-protein kinase 6
trEMBL	tr\|V7AXV8\|V7AXV8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10409.1}

Sequence

Transcript Sequence

>Glyur004762s00047508.1
ATGGGTGACAAATCCAGCGATGTGAACTCCAGCACGACGCTGCTACACGGAAAGTACGAGTTGGGCCGGTTATTGGGCCACGGAACATTCGCGAAGGTGTACCACGCGCGGAACCTGAAAACAGGAAAGAGCGTGGCGATGAAGGTTGTTGGGAAGGAGAAAGTGATAAAAGTTGGCATGGTGGAGCAGATAAAGAGGGAGATCTCAGCGATGAGCATGGTGAAGCACCCTAACATTGTCCAACTCCACGAAGTAATGGCTAGCAAGTCCAAGATCTACATCGCAATTGAACTCGTTCGTGGCGGTGAACTCTTCAACAAAGTAGCAAGGGGACGGTTAAAGGAAGATGCCGCCAGGGTGTACTTTCAACAACTGATCTCCGCCGTCGATTTCTGCCACAGCCGCGGTGTTTACCATCGCGATCTCAAGCCGGAGAATCTCCTCCTCGACGAGGAAGGGAACCTCAAGGTAACTGACTTTGGACTTAGCACTTTCTCCGAACACCTCCGGCACGACGGCCTGTTGCACACCACGTGTGGCACTCCGGCTTATGTTGCGCCGGAGGTGATCGGGAAGAAAGGCTATGACGGTGCGAAGGCCGATATATGGTCTTGTGGAGTCATCCTCTACGTGCTTTTGGCAGGGTTTTTACCCTTCCAAGATGAGAATTTGATGGCCATGTATAAGAAGATTTATAGGGGAGACTTTAAATGCCCACCTTGGTTTTCCTCAGAGGCACGCCGACTCATCACGAAGCTTCTAGACCCGAACCCGAATACCCGGATAACGATTNCGAAAATCATGGACTCGCCATGGTTTAAGAAATCGGTCCCCAACAAGGGAAGGAAGGATAATGAAGGAGGGTTCGATTTGGAGGAGAAGCAGCAACAACACCAACCGACGACGATGAATGCTTTCCACATAATCTCGCTCTCTGAAGGGTTTGATTTGTCGCCGTTGTTTGAGGAGAAGAAGAGGGAGGAGAAGGAGGAGATGAGGTTCGCTACGACGGAGACAGCGAGTAGTGTGATTTCGAGATTGGAGGAGGTGGCGAATGCGGGGAAGTTTGATGTGAAGAAGAGTGATACCAAGGTGAGGTTGCAGGGTCATGAGCGTGGTCGAAAGGGGAAGTTGGCTATTGCTGCTGATATATACGCCATTACGCCGTCGTTTTTGGTGGTCGAGGTTAAGAAGGACAACGGTGATACCTTGGAGTATAACCAGTTCTGTAGCAAAGAGCTTCGCCCGGCGCTCAAGGACATCGTGTGGAGGACTTCACCCCCTGAGAATCCCACCCCTGCTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04762	8172	9476	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.2.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0007165 signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004762s00047508.1	PF00069.20	Pkinase	19	273	8.00E-74
Glyur004762s00047508.1	PF03822.9	NAF	299	360	3.40E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	87.422
SRR1783600	control	88.637
SRR1783602	moderate drought stress	61.225
SRR1811619	moderate drought stress	61.282

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	399.532
DRR006520	Root Summer glycyrrhizin high producing strain	396.323
DRR006521	Root Winter glycyrrhizin high producing strain	12.589
DRR006522	Root Winter glycyrrhizin high producing strain	15.618
DRR006523	Root Summer glycyrrhizin low producing strain	393.612
DRR006524	Root Summer glycyrrhizin low producing strain	337.495
DRR006525	Leaf Summer glycyrrhizin high producing strain	439.686
DRR006526	Leaf Summer glycyrrhizin high producing strain	498.216

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	84.801
SRR2868004	Drought Stress (root)	174.054
SRR2967015	Control (root)	149.264

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	294.994
SRR9715740	Leaf	328.816
SRR9715741	Leaf	272.268
SRR9715739	Root	114.635
SRR9715742	Root	169.567
SRR9715743	Root	163.515

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.293
SRR8749028	MeJA induced 9h	52.196
SRR8749029	MeJA induced 9h	16.449
SRR8749030	Uninduced	165.862
SRR8749031	Uninduced	23.272
SRR8749032	Uninduced	22.843

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	138.401
SRR8400027	Control - Root	172.822