Gene detail

Gene detail information of Glyur004751s00041597

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45616.1	2.00E-118	receptor like protein 6
NR	XP_004506719.1	0	PREDICTED: leucine-rich repeat receptor protein kinase EXS-like [Cicer arietinum]
COG	YP_004775215.1	4.00E-32	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	7.00E-114	Receptor-like protein 12 (Precursor)
trEMBL	tr\|A0A072UHN3\|A0A072UHN3_MEDTR	0	Verticillium wilt resistance-like protein {ECO:0000313\|EMBL:KEH28916.1}

Sequence

Transcript Sequence

>Glyur004751s00041597.1
ATGCAACTTCAAGTGACCATCATTTGTTCCCTCACTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGTCTTGTGTGGCTATCACTCAGACCAGCAATCATTGCTGCTCCAATTAAAGAACAACCTCACGTTCAGGCCAGAAAGTTCCAGCAAACTGAACTCGTGGAATCATAGCATTGCTTGTTGTGATTGGGGCGGTGTAACCTGTGACATTGAGGGACATGTCATTGGCCTTGACCTGAGTGGAGAATCAATCTCTGATGGATTTGACAATTCAAGTTCTCTTTTCAGTCTCCAACATCTCCAGGAATTGAACTTGGCCGATAACAATTTCAATTCTCTCATTCCATCTGGGTTCAACAAGTTGGAGAAGTTGACTCATCTAAATTTGTCATATGCTGGCTTTGTGGGACAGATTCCAATAGAGATTTCTCAGCTGAAGAGGTTGGTCATTCTTGATTTCTCTTCTCTTGGCTATATGACTGGGCAAGTGTTGAAGCTTGAGAACCCAAATCTGCAAAAGCTTGTCCAGAATCTCACCGGCATTAGGCAATTGTATCTGGATGGTGTGAGTATAACAGCTAATGGACAGGAATGGTACAATGCTTTGTTGCCACTGCTGGAACTGCAAGAGCTGAGCATGTCAGACTGCAATCTCTCAGGACCACTTGATTCTTCCCTTGCAGGACTTGAGAATCTATCAGTCATTATTCTTGAAGGGAACTATTTTTCATCCCCAGTGCCTGAATCATTTGCCAAATTTAAAAATCTGACCACCCTCAATCTTGCATTTTGTGGGTTGACTGGAAAGTTTCCGCCAGAAGTATTCAGGATTGGATCACTGTCAGTCATTGACTTATCATCCAACTACAATCTCTGTGGTTCTTTTTCGGATTTCCCATTGCCTGGATCTCTCCAGACCCTGACGGTAAGTAATACAAACTTCTCTGGAGCATTTCCACACACTATTGGTAACATGAGACATTTATCTGCATTGGATCTTTCTTATTGTCAACTTAATGGAACACTCCCATATTCATTGTCAAACCTCACAGAACTCAGTTACCTGGATTTGTCATTTAACAGCTTCATAGGTCCAATGCCATCATTTGGCATGGCCAAAAAACTTAGCCACCTAGACCTTTCTCATAATGGTTTAAGTGGTGCAATTCCATCATCTTCTCACTTTGAAGGACTGCACAATCTTGTGAGCATTGACTTGCGTTACAATTCTATCAATGGGAGCATCCCTTCATCCCTTTTTACACTGCCATCATTGCAGAAGATTCAGCTTTCGTTCAACCAGTTTAATAAGTTTTTGGAGCTCAGAAATTTAACTACCCTAGACCTTTCCTACAACAACTTAACGGTCAATGCAAATGTTACCATTGTTGACCCGTCTTCCTTTCCCAACATTAGCAACCTAAATTTGGCATCATGCAACTTGAAAACATTCCCTCGTTTCTTGAGAAACAAATCCAAATTAGCCAATCTAGACCTTTCATATAACCAGATTCAAGGAACATTACCCAACTGGATTTGGAAACTACAAAATCTTCAAAGCCTTAACATTTCTCACAATTTGCTCACTAATTTGGAAGGACCTTTGCAAAATCTTACTTCCAACTTGATATCCCTTGACCTTCATAACAACCATCTGCAAGGGCAAATACCTGTTTTTCCTAAATATGCTGCCTATTTGGATTACTCAATGAACAAATTTAGCTCTATTACCCCGCAAGATATTGGTAATTACCTGTCTTTCACAATTTTTCTCTCCCTTTCAAACAATACTTTACATGGCAGCATCCCTGACTCCCTCTGCAATGCATTAGATCTTCTAGTGCTTGATCTTTCCCATAATAACTTTTCTGGAACCATTCCCTCATGTCTAATGACAATGACTGAGACTCTTGGGGTATTAAATTTGAGGATGAACAATCTCACAGGCCCTATCCCAGATATGTTTCCAGCTTTGTGTGCTCTAAGGACTCTGGATCTCAAGCATAATAAGTTAGATGGACAGATTCCGAAATCGCTTGCTAATTGCTCAGCATTGGAAGTCTTAGACCTTGCGGAAAACCAAATTATTGACAGATTTCCATGCTTGTTGAAGAACATATCCACACTCCGTGTATTGGTCTTGCGGAAAAACAAATTCTATGGTCCCCTTGGATGTCCAAAGACCGATGGCACTCGGCACATGCTTCAGATAGTTGATCTAGCCTTTAACAACTTCAGTGGTGAACTTCCTAGAAAATTCTTCACAAGGTGGGAAGCAATGATGTCTGATGAAAACCAAGCTGGTTCCGAAGCTAATCACATCCGATTTCTGGTCCTTCAATGCAGTAAAATATATTATCAGGACTCAGTGACAGTTACGAGCAAAGGTCAACGAATGGAGTTGGTTAAGATTCTAACCGTCTTCACTTCCATCGACTTCTCATCCAACCACTTCCAAGGGGAAATACCAGAACAACTATTTGACTTCAAAGCACTCTATGTGCTTAACTTGTCAAACAATGCTCTTTCTGGCCAAATTCCATCATCTATAGGAAATCCGAAGCAACTTGAGTCCTTGGACCTGTCAAACAACTCACTAGAAGGAGAAATTCCTAGAGAGCTTGCAAGTCTATCCTTCCTATCATTTGTGAACCTCTCTTTTAATCATCTGTTTGGAAGAATCCCTACAGGTACTCAAATTCAATCATTTGAAGAAACCTCCTTCATTGGCAATAAAGGACTATGTGGCCCTCCTTTGATGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04751	4620	7672	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004751s00041597.1	PF08263.7	LRRNT_2	35	76	1.00E-08
Glyur004751s00041597.1	PF13855.1	LRR_8	99	138	6.70E-07
Glyur004751s00041597.1	PF13855.1	LRR_8	215	272	4.70E-07
Glyur004751s00041597.1	PF13855.1	LRR_8	310	368	3.70E-08
Glyur004751s00041597.1	PF13855.1	LRR_8	381	441	2.80E-09
Glyur004751s00041597.1	PF13516.1	LRR_6	448	462	0.082
Glyur004751s00041597.1	PF13855.1	LRR_8	476	535	1.10E-07
Glyur004751s00041597.1	PF00560.28	LRR_1	548	566	0.49
Glyur004751s00041597.1	PF00560.28	LRR_1	619	636	0.36
Glyur004751s00041597.1	PF13855.1	LRR_8	668	725	8.20E-09
Glyur004751s00041597.1	PF00560.28	LRR_1	839	859	0.84
Glyur004751s00041597.1	PF00560.28	LRR_1	862	884	0.019

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.560
SRR1783600	control	1.348
SRR1783602	moderate drought stress	0.471
SRR1811619	moderate drought stress	0.461

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.751
DRR006520	Root Summer glycyrrhizin high producing strain	1.642
DRR006521	Root Winter glycyrrhizin high producing strain	1.127
DRR006522	Root Winter glycyrrhizin high producing strain	1.115
DRR006523	Root Summer glycyrrhizin low producing strain	3.097
DRR006524	Root Summer glycyrrhizin low producing strain	3.238
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.042
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.295
SRR2868004	Drought Stress (root)	0.775
SRR2967015	Control (root)	0.555

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.655
SRR9715740	Leaf	0.478
SRR9715741	Leaf	2.385
SRR9715739	Root	0.129
SRR9715742	Root	2.697
SRR9715743	Root	1.911

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.089
SRR8749028	MeJA induced 9h	5.990
SRR8749029	MeJA induced 9h	2.539
SRR8749030	Uninduced	5.708
SRR8749031	Uninduced	3.758
SRR8749032	Uninduced	2.837

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.391
SRR8400027	Control - Root	1.206