Gene detail

Gene detail information of Glyur004750s00044564

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38080.1	0	Laccase/Diphenol oxidase family protein
NR	XP_003516941.1	0	PREDICTED: laccase-4-like [Glycine max]
COG	YP_005009977.1	2.00E-22	multicopper oxidase type 3 [Niastella koreensis GR20-10]
Swissprot	tr\|O80434\|LAC4_ARATH	0	Laccase-4 (Precursor)
trEMBL	tr\|I1J783\|I1J783_SOYBN	0	Laccase {ECO:0000256\|RuleBase:RU361119}

Sequence

Transcript Sequence

>Glyur004750s00044564.1
GTTGTGTACGAGAAACTAAGACAGAGAGAGAGGGGTTAGAGAAGAGACTTGAGTGAGTGAAAATGGAGTACTCTTGGGTTCGATTGCTACTTCTCATTGCTTGCATTCTTCCAGCTTTGGTCGAGTGCAGAGTTAGGCATTACAAATTTCATGTGGTGACGAAAAATATCACTAGATTATGTTCAAGCAAATCCATTGTCACAGTTAATGGGAAGTTCCCAGGACCCACTATTTACGCCAGGGAAGATGATACATCGTCAATCAAGTCAACCACAATGCATGGTGTCAGGCAATTGCGAACAGGTTGGGCTGATGGACCTGCATATATCACACAGTGCCCAATTCAACCAGGGCATACCTATGTGTACAACTTCACCATAACAGGGCAGAGAGGAACACTTCTTTGGCATGCACATGTTAATTGGCTAAGGTCAACTGTCCATGGTGCCTTAGTTATCTTGCCAAAGAGAGGTGTGCCTTATCCTTTTCCAAAGCCAGATGATGAATTGGTTTTGGTATTAGGAGAGTGGTGGAAATCTGATACTGAAGCTGTTATCAATNAAGCTCTCAAATCAGGATTGGCACCAAATGTCTCAGATGCTCATACCATTAATGGTCTTCCAGGGACAGTGGCCAATTGTTCTACACAGGATGTTTACAACCTTCCTGTGGAGAGTGGCAAGACTTACCTACTGAGAGTTATCAATGCTGCACTCAATGAGGAGCTCTTCTTCAAAATTGCTGGCCACAAGCTTACTGTGGTAGAAGTTGATGCCACATATGTAAAGCCTTTCAAGATTGAAACAATTGTGATAGCCCCTGGCCAAACCACCAATGTCCTTTTAACCGCCGACCGAAAATCCGGCAAGTACTTGGTGGCAGCTTCTCCTTTCATGGATGCTCCGGTAGCCGTGGACAACTTGACTGCCACAGCCACATTGCACTACACTGGCACTCTTGCCAATACCCCTACAATTCTCACAACCCCACCTCCTCAAAATGCTACCCAAGTTGCCAACAACTTTGTCAACTCTCTTAAAGGCCTTAATTCCAAGAAATACCCAGTCAAAGTCCCATTAACAGTTGATCATTCACTTTTCTTCACTGTGGGATTGGGGATCAACCCATGTCCATCATGCAAAGCTGCAAATGGGAGCAGAGTTGTGGCTTCTATCAATAATGTGACATTTACTATGCCAACCACTGCTTTGCTTCAGGCACATTATTTCAACATCAATGGTGTGTTCACCACAGATTTCCCAGCCAAACCACCTCATGTGTTCAACTTCACAGGGGCTGGACCAGCAAATTTGAACACCACAACTGGAACAAAACTTTACAGGCTACCATTCAATGCTACAGTTCAGCTTGTTATGCAAGATACTGGGATCATTGCACCTGAGAACCATCCAGTTCATCTTCATGGGTTCAATTTCTTTGTTGTTGGTAGAGGAATAGGAAATTACAATAGCAAAACTGATCCAAAGAACTTTAACCTTGTTGATCCTGTTGAAAGGAACACAATTGGAGTACCAGCTGGAGGGTGGGTTGCAATTAGATTCAGAGCAGATAATCCAGGGGTTTGGTTCTTGCATTGCCATTTGGAGGTGCATACAACTTGGGGTCTAAAGATGGCCTTTTTGGTGGACAATGGCAAAGGTGCTAAGCAATCATTGATATCCCCACCAAAAGATCTTCCAAAATGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04750	2328	6580	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0046274 lignin catabolic process

GO:0055114 oxidation-reduction process

cellular_component
GO:0048046 apoplast

molecular_function

GO:0005507 copper ion binding

GO:0016491 oxidoreductase activity

GO:0052716 hydroquinone:oxygen oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004750s00044564.1	PF07732.10	Cu-oxidase_3	31	135	1.00E-28
Glyur004750s00044564.1	PF00394.17	Cu-oxidase	148	297	6.90E-44
Glyur004750s00044564.1	PF07731.9	Cu-oxidase_2	399	531	1.80E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.605
SRR1783600	control	2.456
SRR1783602	moderate drought stress	2.190
SRR1811619	moderate drought stress	2.338

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	32.996
DRR006520	Root Summer glycyrrhizin high producing strain	32.725
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	37.367
DRR006524	Root Summer glycyrrhizin low producing strain	36.940
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.520
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.898

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.354
SRR2868004	Drought Stress (root)	19.568
SRR2967015	Control (root)	11.010

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.497
SRR9715740	Leaf	10.652
SRR9715741	Leaf	4.008
SRR9715739	Root	1.087
SRR9715742	Root	21.728
SRR9715743	Root	14.916

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.002

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.566
SRR8400027	Control - Root	5.039