Gene detail information of Glyur004746s00044299 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48540.1 | 5.00E-05 | receptor-like protein kinase-related family protein |
| NR | KEH23743.1 | 6.47E-74 | salt stress response/antifungal domain protein [Medicago truncatula] |
| Swissprot | tr|A4ZDL6|GNK2_GINBI | 1.00E-14 | Antifungal protein ginkbilobin-2 (Precursor) |
| trEMBL | tr|A0A072U3K8|A0A072U3K8_MEDTR | 2.00E-74 | Salt stress response/antifungal domain protein {ECO:0000313|EMBL:KEH23743.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04746 | 12227 | 12661 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004746s00044299.1 | PF01657.12 | Stress-antifung | 44 | 142 | 7.60E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.798 |
| SRR1783600 | control | 0.844 |
| SRR1783602 | moderate drought stress | 3.181 |
| SRR1811619 | moderate drought stress | 3.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.623 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.742 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.770 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.249 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.539 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.012 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 18.907 |
| SRR2868004 | Drought Stress (root) | 34.862 |
| SRR2967015 | Control (root) | 14.850 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.153 |
| SRR9715740 | Leaf | 2.758 |
| SRR9715741 | Leaf | 0.996 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.211 |
| SRR9715743 | Root | 0.204 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.329 |
| SRR8749028 | MeJA induced 9h | 1.956 |
| SRR8749029 | MeJA induced 9h | 1.818 |
| SRR8749030 | Uninduced | 0.632 |
| SRR8749031 | Uninduced | 0.330 |
| SRR8749032 | Uninduced | 0.541 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.354 |
| SRR8400027 | Control - Root | 5.183 |