Gene detail information of Glyur004739s00039516 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G20430.1 | 0 | Subtilase family protein |
| NR | XP_003630005.1 | 0 | Serine protease aprX [Medicago truncatula] |
| COG | YP_004097803.1 | 5.00E-72 | peptidase S8 and S53 subtilisin kexin sedolisin [Intrasporangium calvum DSM 43043] |
| Swissprot | tr|O64495|SDD1_ARATH | 1.00E-78 | Subtilisin-like protease SDD1 {ECO:0000303|PubMed:10809670} (Precursor) |
| trEMBL | tr|G7L9K7|G7L9K7_MEDTR | 0 | Subtilisin-like serine protease {ECO:0000313|EMBL:AET04481.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04739 | 644 | 6140 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004739s00039516.1 | PF05922.11 | Inhibitor_I9 | 48 | 161 | 7.20E-22 |
| Glyur004739s00039516.1 | PF00082.17 | Peptidase_S8 | 190 | 650 | 3.40E-35 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.261 |
| SRR1783600 | control | 0.244 |
| SRR1783602 | moderate drought stress | 0.324 |
| SRR1811619 | moderate drought stress | 0.298 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.635 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.562 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.358 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.333 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.493 |
| SRR2868004 | Drought Stress (root) | 9.884 |
| SRR2967015 | Control (root) | 7.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.060 |
| SRR9715740 | Leaf | 0.051 |
| SRR9715741 | Leaf | 0.026 |
| SRR9715739 | Root | 0.100 |
| SRR9715742 | Root | 0.245 |
| SRR9715743 | Root | 0.332 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.101 |
| SRR8749028 | MeJA induced 9h | 0.027 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.132 |
| SRR8400027 | Control - Root | 0.609 |