Gene detail information of Glyur004736s00045632 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65820.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004513407.1 | 0 | PREDICTED: putative pentatricopeptide repeat-containing protein At5g65820-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|Q9FH87|PP447_ARATH | 0 | Putative pentatricopeptide repeat-containing protein At5g65820 |
| trEMBL | tr|A0A072TSC5|A0A072TSC5_MEDTR | 0 | PPR containing plant-like protein {ECO:0000313|EMBL:KEH20322.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04736 | 8078 | 12473 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004736s00045632.1 | PF13812.1 | PPR_3 | 167 | 196 | 0.14 |
| Glyur004736s00045632.1 | PF13041.1 | PPR_2 | 207 | 249 | 7.40E-10 |
| Glyur004736s00045632.1 | PF01535.15 | PPR | 274 | 302 | 0.0013 |
| Glyur004736s00045632.1 | PF13041.1 | PPR_2 | 304 | 353 | 6.40E-17 |
| Glyur004736s00045632.1 | PF12854.2 | PPR_1 | 370 | 402 | 2.90E-11 |
| Glyur004736s00045632.1 | PF01535.15 | PPR | 413 | 442 | 0.025 |
| Glyur004736s00045632.1 | PF13041.1 | PPR_2 | 448 | 491 | 6.00E-11 |
| Glyur004736s00045632.1 | PF01535.15 | PPR | 556 | 583 | 0.26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.388 |
| SRR1783600 | control | 3.467 |
| SRR1783602 | moderate drought stress | 5.629 |
| SRR1811619 | moderate drought stress | 5.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.054 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.977 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.814 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.543 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.652 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.624 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.350 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.343 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.594 |
| SRR2868004 | Drought Stress (root) | 8.076 |
| SRR2967015 | Control (root) | 8.260 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.020 |
| SRR9715740 | Leaf | 3.799 |
| SRR9715741 | Leaf | 4.126 |
| SRR9715739 | Root | 1.125 |
| SRR9715742 | Root | 5.340 |
| SRR9715743 | Root | 3.881 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.697 |
| SRR8749028 | MeJA induced 9h | 14.265 |
| SRR8749029 | MeJA induced 9h | 11.191 |
| SRR8749030 | Uninduced | 9.901 |
| SRR8749031 | Uninduced | 10.326 |
| SRR8749032 | Uninduced | 8.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.540 |
| SRR8400027 | Control - Root | 5.384 |