Gene detail

Gene detail information of Glyur004731s00047544

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT4G02350.1	exocyst complex component sec15B
NR	XP_004494382.1	PREDICTED: probable exocyst complex component 6-like [Cicer arietinum]
Swissprot	tr\|F4JHH5\|SC15B_ARATH	Exocyst complex component SEC15B
trEMBL	tr\|I1M637\|I1M637_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G00390.1}

Sequence

Transcript Sequence

>Glyur004731s00047544.1
ATGCACCCNTCCAAACCCCCGCGCCGGAAAGTTGTTCCGGCGAACGGCGATGACTCCGGCGACAAGCTTGACCAGCTCCTCCTCTCCTCCGCCATATGCAACAACGAGGACTTGGGACCGTTCATCCGCAAGGCCTTCGCCTCCGGCAAGCCGGAGACCCTCCAACACCACCTCCGCCACTTCGCCCGCTNGAAGGAATCAGAGATCGAAGAAGTCTGCAAGGCTCACTACCAGGACTTCATCCTCGCCGTGGACGACCTCCGATCCCTCCTCTCCGACGTCGATTCACTCAAGTCATCCCTCTCCGACTCCAACTCCAAGCTCCAGTCCGTTGCTCGCCCCCTCCTCTCCTCCCTCGACTCCTTCGTCGAAACGCGTAACGTCTCGAAGAACGTGAACCTCGCCATCGACTCGGTCCGAACGTGCATCACTCTTATGGAAGCCTGCTCACGCGCCAACCGCCACCTCTCCGGCGACAACTTCTACATGGCGCTCAAGTGCGTGGACGCCATCGAGAGGGAGTGCCTCGACAAAACGGCGTCGTCAACGCTGAGGAGGATGCTGGAGAAGAAGATTCCAGAGATTCGGTCCTACATAGAGAGGAAAGTCAACAAGGAGTTCGGGGACTGGTTGGTGGAGATCCGTGTGGTGAGTCGCAACTTGGGGCAATTGGCCATTGGCCAGGCCTCGTCGGCGAGGCAGAGAGAAGAAGATCTCAGGATTAAGCAGCGCCAAGCGGAGGAACAGAGCAGGCTAAGCGTTAGGGATTGCATTTATGCTTTGGAGGAAGAGGATGAGGATGGGAATGGAATCGCCGGCGGGATCGGAGAGGATGGTTACGGTAACGGCGGTGGAATTCTGGGGTTTGATTTGACTCCGTTGTATAGGGCTTACCATATTCACCAGACGTTAGGATTGGAGGATCGGTTTAAGCAGTATTATTTTGAGAACCGGAAGCTTCAGTTGACTTCTGACTTTCAGGTATCGTCGATGACGCCTTTTCTTGAATCGCATCAAACATTTTTTGCACAGATTGCGGGTTTCTTTGTGGTGGAGGATCGGGTGTTTAGGACTGGGGGTGGTTTGATATCTAAAATGGAGGTTGAGAATTTGTGGGAGATTGCTGTTAGCAAAATGTGTTCTGTGTTGGAGGACCAGTTCTCCAGAATGCAAACTGCTAATCATTTGTTGTTGATTAAGGACTATGTGAGTCTGTTGGGAGTGACACTGCGGAGATATGGGTACCCCATTGACGCATTGCTTGATGTTTTGAGCAAACATAGGGATAAATACCATGAGTTGCTTTTGTCGGACTGTAAGAAGCAGATCGCCGAAGCCCTTGCNGCGGATAAGTTTGAGCAGATGTTGATGAAGAAAGAGTATGAATATTCAATGAATGTGCTTTCTTTCCAGATTCAGACATCGGATATCGTGCCTGCTTTTCCTTATTTAGCACCGTTTTCATCCACTGTGCCAGATTGTTGTCGTATTGTGCGGTCCTTCATTGAGGATTCCATTAGTTTCATGTCATATGGCGGGCAGCTTGAGTTCTATGATGTTGTTAAGAAATATTTAGACAGGCTCTTGGGCGATGTTTTGGACGAAGGTTTATTAAAGCTTATCAATACATNGGTTAGTGGTGTCTCCCAGGCAATGCAGGTAGCAGCAAATATGGCTGTATTGGAGCGTGCGTGCGATTTTTTCTTTCGCCACGCTGCGCAGCTTTCGGGGGTTCCCTTGAGAATGGTGGAGAGAAGCAGGAGGCAGTTCCCTCTGAGAAAAGCTCGTGATGCTGCAGAAGTAATGCTCTGTGGGCTACTCAAAGCCAAAGTTGATGGATTTATGTCCTTGATTGAGAATGTAAATTGGATGACTGATGAGCCACCTCAGAGTGGGAATGAATATGTGAATGAGGTCATAATTTATTTGGAAATTTTGGTTTCAACTGCACAACAGATATTGCCACCTCAAGTCCTTAAAAGAGTTCTACAGGATGTTCTTTCTCACATATCGGATAAGATTGTTGCGACTTTAGCTAGTGATTCTGTTAAGAGGTTTAATGTCAATGCCGTTACTGGACTTGACGCGGACATCCGGATCTTAGAATCATTTGCTGATAATCAGGCTTCCCTTTTCTCTGATGGGGATGCTGATCAGTTGAAAACATCACTTGCCGTGTCAAGGCAATTGATTAATTTGCTGTTAAGCAATCATCCGGAGAACTTCCTGAATCCAGTGATCAGAGAGAGGAGTTACAACTCTTTGGACCACAAGAGAGTGGTGATTGTTTCAGAAAAGTTGAGGGATCCTTCGGAACGGCTGTTCGGAACCTTTGGTAGTCGTGGGGCCAGGCAGAATCCAAAAAAGAAATCACTGGATACATTGATTAAAAGACTTAGGGATGTTAGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04731	3927	6338	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006904 vesicle docking involved in exocytosis

cellular_component
GO:0000145 exocyst

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004731s00047544.1	PF04091.7	Sec15	462	767	7.50E-79

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.506
SRR1783600	control	20.602
SRR1783602	moderate drought stress	18.152
SRR1811619	moderate drought stress	17.760

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.256
DRR006520	Root Summer glycyrrhizin high producing strain	27.656
DRR006521	Root Winter glycyrrhizin high producing strain	13.798
DRR006522	Root Winter glycyrrhizin high producing strain	13.443
DRR006523	Root Summer glycyrrhizin low producing strain	36.380
DRR006524	Root Summer glycyrrhizin low producing strain	36.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.456
DRR006526	Leaf Summer glycyrrhizin high producing strain	13.351

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.112
SRR2868004	Drought Stress (root)	51.883
SRR2967015	Control (root)	49.834

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.168
SRR9715740	Leaf	26.680
SRR9715741	Leaf	31.778
SRR9715739	Root	61.912
SRR9715742	Root	51.748
SRR9715743	Root	51.213

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.891
SRR8749028	MeJA induced 9h	18.608
SRR8749029	MeJA induced 9h	12.366
SRR8749030	Uninduced	13.695
SRR8749031	Uninduced	9.988
SRR8749032	Uninduced	8.852

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	38.703
SRR8400027	Control - Root	47.364