Gene detail information of Glyur004729s00043785 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G12010.1 | 2.00E-26 | Disease resistance protein (TIR-NBS-LRR class) family |
| NR | KEH16185.1 | 0 | TIR-NBS-LRR RCT1-like resistance protein, putative [Medicago truncatula] |
| COG | YP_007098491.1 | 4.00E-08 | Leucine Rich Repeat (LRR)-containing protein [Chamaesiphon minutus PCC 6605] |
| Swissprot | tr|O23530|SNC1_ARATH | 3.00E-24 | Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 |
| trEMBL | tr|A0A072TRJ1|A0A072TRJ1_MEDTR | 0 | TIR-NBS-LRR RCT1-like resistance protein, putative {ECO:0000313|EMBL:KEH16185.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04729 | 4615 | 9029 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.399 |
| SRR1783600 | control | 4.638 |
| SRR1783602 | moderate drought stress | 2.181 |
| SRR1811619 | moderate drought stress | 2.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 10.882 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.785 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.480 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 17.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 17.760 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.157 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.672 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.712 |
| SRR2868004 | Drought Stress (root) | 39.135 |
| SRR2967015 | Control (root) | 37.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.361 |
| SRR9715740 | Leaf | 3.544 |
| SRR9715741 | Leaf | 9.411 |
| SRR9715739 | Root | 1.179 |
| SRR9715742 | Root | 5.478 |
| SRR9715743 | Root | 5.300 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.490 |
| SRR8749028 | MeJA induced 9h | 13.429 |
| SRR8749029 | MeJA induced 9h | 8.300 |
| SRR8749030 | Uninduced | 8.750 |
| SRR8749031 | Uninduced | 13.992 |
| SRR8749032 | Uninduced | 7.608 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.954 |
| SRR8400027 | Control - Root | 8.509 |