Gene detail

Gene detail information of Glyur004707s00045150

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06130.1	2.00E-34	Heavy metal transport/detoxification superfamily protein
NR	KEH32193.1	1.19E-70	heavy metal-associated domain protein [Medicago truncatula]
Swissprot	tr\|Q94BT9\|ATOX1_ARATH	4.00E-11	Copper transport protein ATX1
trEMBL	tr\|A0A072USX2\|A0A072USX2_MEDTR	4.00E-71	Heavy metal-associated domain protein {ECO:0000313\|EMBL:KEH32193.1}

Sequence

Transcript Sequence

>Glyur004707s00045150.1
CACAATTACAATGAAGTCTCTTCCGTAGCAAAATACTACCCAATAAATAAAGGCACCAAAGAAAGATCGAACGCTTGGAGCACCATTACCCATTTCTTCTCTTCCCAAGTCTGAGCCTTGCCGGTTAGGTTCCCTGTCTCTGCTCAGAGACTCAAACCATTTTCATTTCAACCATTTGCTCTGTTTTTCTTCACTCCTAAAAAAAGCCTACCAAGGAAGAAATTCCATTTTTCTCTCTGTTTTTTGTTCTCTGTTTTTTCCTTCTACTGTTGCCCAGATCTATTACCACTTTTTTGCTGTTGCCCAGATCTTTGTTATTATAAGTTAAAACCTTTTGCTCTGTTANAGTGGTATAGTAAGACATGAGTAAAGAAGAAATTTTGAAGATACAGAAATGTGTTCTTAAAGTGAACATACACTGTGACGGGTGCAAGCACAAAGTGAAGAAAATATTGCAGAAAATTGATGGGGTGTTCACCACTGAGATAGATGCCGAGCAGGGGAAGGTGACGATTTCAGGGAATGTGGACCCCAACGTTCTCATCAAGAAGCTTGCGAANTCAGGGAAACATGCAGAGCTCTGGGGTGCACCCAAAGCAAACAACAATAATAACCAGAACCACCTTGCTAACCAGATAAAGAACATGCAAATTGACAACGGCAAAGGTGGGGGAAACAACAATAACAACAAAGGTCAGAATCAACAACAGAAGGGTGGAAATATCCAAAACCAACCCAAAGGTGGTGGTGGTGGCCAGCAAGGACCAAATCCTCAGCAGCTGCAGCAGCTGCAGCAGCTACAGCAACAACAGCTCCAGCAGCACCTGCAGCAACTTCAGCAGATGAAAGGGTTCCAAGATCTGAATCTGCCCCAATTCAAGGGCCTGAACATNAAGCCTCCCAACCCGAACCCGAAAGCGGTCAAGTTCGATGTGCCTGAAGAAGAGGGTGACTTCAGTGATGACGAGCTAGATGAATTTGATGATGAAGATGATTTTGATGACGAGTTTGATGATGAAATGGAGGATTTCCCCCCGAATAATAAGATGAAGCCCCCTCCTATGGGGAATGGCGCTCACATGANGATGAATGGGAATCATCCACAGCTCATGAATGCTGCTCAAAAGGGTGGTGGGAATAATGGCGGTGGAGGCAACGGGAAGAAAGGCGGTGGTGGTGGACCTGTGCCTATGCCTGTTCAAATGCAGGGCAGTGGAGGAAAGAAAGGCGGTGGTGGCGGTGGCGGAGGAAACAATCAGAATCAGGGTGGAGGTAACAAAAATAATGGGGGCAAAAACGGAGGTGGGGTNCCAGAGGGTAAAAATGGTGGTGGGGGAAATAAGAATGGAGGGAATAATAATAATAATATCAACAACGGGGGTAAAAAGGGTAATCCAATAGCAATGGGTGAAGGTGGGGTTCAAGCTGCTATGAACAATGGATTCCAAAACATGAGCGGTGGTGGTGGTGGTGGTGGTGGTGGTCGACCTCACCCTGCTATGGGTGGGGGTAATGTGGGGCCCATGGGCATGCCAATGAACCCCCAAATGGTTAACATTCCGGCCGTTCAAGGCCTACCGGCAGGCGCCGTCAACGGCGGCGGAGGAGGATACTTTCAAGGCGGTGCTGGTGGTGGCCCGGATGTCATGCCCGGAAATCCCCACCACCACCAACAACAGCAGCTGCTACAGCAGCAGCAACAACAACAGTACATGGNTGCGATGATGAACCAACAACGCGCCATGGGGAATGACAGATTCCAGCCAATGATGTACGCGCGGCCACCACCTGCCGTCAATTACATGTACCCTCCTTACCCTTATCCTCCTCCTCCTCCTTCGGATCCCTACACCCACTTCTTCAGCGATGAGAACACTTCTAGCTGCAATGTCATGTGATGATGATGATGATGCTACTGCTGCTTCAGTTACAGTTGCTCCCCTCTAATTATTTGAGGCAATATTATATTATTATATTATATTATTATACAACAATGGAAAATGAGTCTTAATTTTAGTTTTGATTTTCCATTTTTCCTCCNNCCCTTTTTCCTCCTCCCAAGTTATATTTTAGGGGGTTTTAGTTGACCATAGTAGGGAGTAGTTTATAGATTTTTATGATATTTTTACTATGTTTCTTGGGTAGTAGTATTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04707	9508	12037	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0030001 metal ion transport

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004707s00045150.1	PF00403.21	HMA	14	69	3.00E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	124.513
SRR1783600	control	123.727
SRR1783602	moderate drought stress	115.364
SRR1811619	moderate drought stress	112.764

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	123.024
DRR006520	Root Summer glycyrrhizin high producing strain	117.343
DRR006521	Root Winter glycyrrhizin high producing strain	14.469
DRR006522	Root Winter glycyrrhizin high producing strain	14.253
DRR006523	Root Summer glycyrrhizin low producing strain	42.011
DRR006524	Root Summer glycyrrhizin low producing strain	43.352
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.655
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.492

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.968
SRR2868004	Drought Stress (root)	33.901
SRR2967015	Control (root)	34.285

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.837
SRR9715740	Leaf	0.920
SRR9715741	Leaf	1.281
SRR9715739	Root	31.490
SRR9715742	Root	48.324
SRR9715743	Root	43.948

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	61.987
SRR8749028	MeJA induced 9h	50.814
SRR8749029	MeJA induced 9h	29.589
SRR8749030	Uninduced	0.751
SRR8749031	Uninduced	0.406
SRR8749032	Uninduced	1.756

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	112.490
SRR8400027	Control - Root	109.349