Gene detail

Gene detail information of Glyur004695s00039093

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G32730.2	4.00E-118	Homeodomain-like protein
NR	XP_003527826.1	0	PREDICTED: myb-related protein 3R-1-like [Glycine max]
Swissprot	tr\|Q9S7G7\|MB3R1_ARATH	0	Myb-related protein 3R-1
trEMBL	tr\|I1K997\|I1K997_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G08660.1}

Sequence

Transcript Sequence

>Glyur004695s00039093.1
ATGGAAGGTGACAGGACGATCTCTACTCCGTCAGATGGAACCGTTGACGGCGTTCAGAAAATTAGAGCACTGCATGGGAGGACTACTGGCCCTACAAGGCGCTCTACAAAAGGACAATGGACTCCTGAGGAGGATGATATTTTGCGGAATGCTGTTCAGCGTTTTAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGATAGAACTGATGTACAATGCCTGCATAGGTGGCAGAAAGTCTTAAATCCAGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGATTTGGTAAACAAATATGGGCCTAAAAAGTGGTCTACTATCGCACAGCATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCATAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGTTGGCTCTAATACGTGCTCATCAGATTTATGGNAACAGATGGGCAGAATTAACCAAGTTTTTGCCTGGAAGGACAGACAATGCTATAAAGAACCACTGGAATAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCATCGGGCTTGCTTACTCAGTTACAGAATGCACCACTTGTTGGAAATCTGAATCAACCTATTGCTTCATCCTCTGCAAGGTTGCAGCGCAGTGGAGATGATAATGGTCCTAGGGGGACTGAAGGAGAGGAAGTTTCACAGTGTAGCCAGGATTCAGCTAATGCTGGTCACTTCTCGTCTGCCAGAGAGATGAGCAATCTTGTTTTACAAACTAGGGAGGAATACAGGCCAAATGAAGAATCTAATCTAGGAAAGGGATATAGTCGTAGTCAAGCATCCTGTTCAGAGCCATATTACGTGTCTCTGGATGATGTTACTGCATCCCAACCAGACATAGCTCGCCAAGAGGTTTGCTCTTCTCAATTTATTGAGCAGAAATACTCAAACGAACCCAGAAGTTCCACAAATGCGGATAGCGAGTTTAATATACATGCTTTACCCGATATTTCCTCAATGGACTTTGGGCAGGAATTATCGCAGTTCCAAAATGACTGTACTACTAGTGAAAGTCATGACATGGGAAATGTTCCATTTCAGTCTTCAGTGGGGCTAAGTGTTGCGACGTCCATNGGACCCACATCTATGGACTCTGCTAAAGGAGAGTACATGTTGATATCTGATGATGAATGTTGCAGAATCCTATTTTCAGCGGCAATGAGCGATACAGTTAACTTGTCTGGATGCACTTCATCTCTATGTCAGTCATCTTTGTCATCTGTCCCGTCAGTACTTTCTTCTAGTGATGGTAGGATATTGTATACTGCCGAAGCCAATCAGTTGGTAGGCTCTGAGGATCAGCAGTTTGTCACCAGAGCACATGATGACTTGACTTATGCCAATGATATATCCAGTTCTCCTTGTAACGATAGGATAGATAGCGCTGCAATGCAAGAGCCATCAGACGTTGCGAAGGATGATTCAAGTTTGGTGCCTGTAAATAGTTCTAGTTGTGGATCAGATACTATGCAAACTAGCTATCCAGTGGATGGAAATCCAAATGAGCATACAGAACAGGAGGACGCAGGAGCTCTATGTTATGAACCTCCCCGTTTTCCAAGCTTGGATATACCTTTCTTAAGCTGTGATCTTATACAATCCGGGGGTGATTTGCAGCAAGAATTTAGTCCCCTAGGTATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTAACTCCTTTCAGATTGTGGGACTCACCTTCTCGCGATGATAGTCCAGATGCCTTGTTGAAAAGTGCTGCTAAAACTTTCACGAGTACACCGTCCATATTAAAGAAACGACACCGGGACCTTTTATCTCCGCTATCAGATAAAAGAATCGACAAGAAACTAGAGATTGACATGACATCAACATTGATTAAAAACTTTTCCCGTCTGGATGTCATGTTTGATGACAATGGGACTCAGGGAGAAGATTTTCTTTCGTCTTCAATGCAAAAAATGAACTCTGGCANCTCTATTGAAGATGATGATAAAGAAAATTGTGGAGAAGCTTTTAAAGTTGAACAAGTNGAGGAGAAAAGTAAATCTGTGATTTTGGACGACAAAAAGTCAGAAAAAGATACAGGTGACAGTAATTCTCAGGATAAGATTGAGCAGCAACCTTGTGATGCTGATTCTAAGATGAAGAATGATGTTAATGCTGCTGCTGAGATTGTGCAACAACCTTCTGGAGTTTTGGTTGAACNTGATATGAATGACCAGATGCTGTATTCTCCTGATCAAGTTGGTTTGAAATCAGGCAGAGTTCTAAGTTTAAGTGCTAGAAATCATAAAATTCCATGCTCAAGGCTTAATTCTCCTTCTGTTCGATTAAAGGAGAACGAAAGACTTTCAGTTGCTGTTACTTGTGTACAATCCGTCTGTTCTTCAGGCCCAGGGGAGAATACGGGTGATCACACTGGAAACGATGGTGGTTTTGAAACTTGTAGCATTTTTGGCGGAACACCTTTTAGGAAAAGCATTGAATCACCTTCAGCATGGAAATCTCCTTGGCTCTTCAACACNTTTTTGTCTAGCCCCAGAATTGAAACTGAAATTACAATTGAGGACTTTGGGTTTTTCATGAGCCCCGGGGATAGAAGCTATGATGCAATCGGATGGATGAAACAGATCAGTGAACAAACTGCTGCTCAATATGCCAATGCTCATGAGATTTTGGGAAATGACACTNCTAAGGCGTTACCAAAAGATGCANCTGGAAGCAACAGAGATGGGGACCAGGAAAATAACGATCCTCATAATCAGCATGGGAACCATTCTGAGTCGGCTTCAAATGCTCTGGTGGAGCGACGCATGCTTGACTTTAGCGAATGTGGAAGTCCGGGCAAGGGTGATAACAGCAAATCCTCAACTATGAGCCCNTCTTCGCATTTGTTGAAGGGCTTTTATAGTTATAAGACTTAA

Protein Sequence

>Glyur004695s00039093.1
MEGDRTISTPSDGTVDGVQKIRALHGRTTGPTRRSTKGQWTPEEDDILRNAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEELALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLTQLQNAPLVGNLNQPIASSSARLQRSGDDNGPRGTEGEEVSQCSQDSANAGHFSSAREMSNLVLQTREEYRPNEESNLGKGYSRSQASCSEPYYVSLDDVTASQPDIARQEVCSSQFIEQKYSNEPRSSTNADSEFNIHALPDISSMDFGQELSQFQNDCTTSESHDMGNVPFQSSVGLSVATSXGPTSMDSAKGEYMLISDDECCRILFSAAMSDTVNLSGCTSSLCQSSLSSVPSVLSSSDGRILYTAEANQLVGSEDQQFVTRAHDDLTYANDISSSPCNDRIDSAAMQEPSDVAKDDSSLVPVNSSSCGSDTMQTSYPVDGNPNEHTEQEDAGALCYEPPRFPSLDIPFLSCDLIQSGGDLQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTSTPSILKKRHRDLLSPLSDKRIDKKLEIDMTSTLIKNFSRLDVMFDDNGTQGEDFLSSSMQKMNSGXSIEDDDKENCGEAFKVEQVEEKSKSVILDDKKSEKDTGDSNSQDKIEQQPCDADSKMKNDVNAAAEIVQQPSGVLVEXDMNDQMLYSPDQVGLKSGRVLSLSARNHKIPCSRLNSPSVRLKENERLSVAVTCVQSVCSSGPGENTGDHTGNDGGFETCSIFGGTPFRKSIESPSAWKSPWLFNTFLSSPRIETEITIEDFGFFMSPGDRSYDAIGWMKQISEQTAAQYANAHEILGNDTXKALPKDAXGSNRDGDQENNDPHNQHGNHSESASNALVERRMLDFSECGSPGKGDNSKSSTMSPSSHLLKGFYSYKT

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04695	1472	6917	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004695s00039093.1	PF00249.26	Myb_DNA-binding	37	83	8.00E-16
Glyur004695s00039093.1	PF00249.26	Myb_DNA-binding	89	135	1.40E-18
Glyur004695s00039093.1	PF00249.26	Myb_DNA-binding	141	183	5.70E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.025
SRR1783600	control	2.044
SRR1783602	moderate drought stress	1.341
SRR1811619	moderate drought stress	1.332

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.502
DRR006520	Root Summer glycyrrhizin high producing strain	3.455
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.699
DRR006524	Root Summer glycyrrhizin low producing strain	0.740
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.813
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.799

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	11.769
SRR2868004	Drought Stress (root)	4.882
SRR2967015	Control (root)	5.984

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.818
SRR9715740	Leaf	0.247
SRR9715741	Leaf	0.647
SRR9715739	Root	0.321
SRR9715742	Root	1.153
SRR9715743	Root	1.184

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.000
SRR8749028	MeJA induced 9h	6.446
SRR8749029	MeJA induced 9h	5.170
SRR8749030	Uninduced	0.388
SRR8749031	Uninduced	1.139
SRR8749032	Uninduced	0.902

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.582
SRR8400027	Control - Root	6.114