Gene detail information of Glyur004690s00043293 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80410.1 | 5.00E-73 | tetratricopeptide repeat (TPR)-containing protein |
| NR | KGN45336.1 | 5.01E-94 | hypothetical protein Csa_7G440577 [Cucumis sativus] |
| COG | YP_001526382.1 | 1.00E-06 | hypothetical protein AZC_3466 [Azorhizobium caulinodans ORS 571] |
| trEMBL | tr|A0A0A0KC08|A0A0A0KC08_CUCSA | 2.00E-94 | Uncharacterized protein {ECO:0000313|EMBL:KGN45336.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04690 | 5700 | 10822 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004690s00043293.1 | PF13414.1 | TPR_11 | 24 | 71 | 1.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.964 |
| SRR1783600 | control | 3.980 |
| SRR1783602 | moderate drought stress | 4.799 |
| SRR1811619 | moderate drought stress | 4.439 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.805 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.737 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.959 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.896 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.246 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.976 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.371 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.483 |
| SRR2868004 | Drought Stress (root) | 10.828 |
| SRR2967015 | Control (root) | 9.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.569 |
| SRR9715740 | Leaf | 3.276 |
| SRR9715741 | Leaf | 4.511 |
| SRR9715739 | Root | 2.438 |
| SRR9715742 | Root | 8.739 |
| SRR9715743 | Root | 7.181 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.971 |
| SRR8749028 | MeJA induced 9h | 27.339 |
| SRR8749029 | MeJA induced 9h | 6.750 |
| SRR8749030 | Uninduced | 6.331 |
| SRR8749031 | Uninduced | 8.628 |
| SRR8749032 | Uninduced | 2.346 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.079 |
| SRR8400027 | Control - Root | 13.137 |