Gene detail information of Glyur004683s00047277 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G71695.1 | 9.00E-52 | Peroxidase superfamily protein |
| NR | AFK48200.1 | 1.31E-94 | unknown [Lotus japonicus] |
| Swissprot | tr|Q96520|PER12_ARATH | 3.00E-68 | Peroxidase 12 (Precursor) |
| trEMBL | tr|I3T6Q8|I3T6Q8_LOTJA | 5.00E-95 | Uncharacterized protein {ECO:0000313|EMBL:AFK48200.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04683 | 85 | 666 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00430 | E1.11.1.7 | EC:1.11.1.7 | Phenylpropanoid biosynthesis | map00940 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004683s00047277.1 | PF00141.18 | peroxidase | 1 | 135 | 2.00E-31 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.100 |
| SRR1783600 | control | 4.192 |
| SRR1783602 | moderate drought stress | 3.369 |
| SRR1811619 | moderate drought stress | 3.265 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.148 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.190 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.160 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.159 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 390.510 |
| SRR2868004 | Drought Stress (root) | 294.541 |
| SRR2967015 | Control (root) | 357.993 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.269 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 5.217 |
| SRR9715742 | Root | 1.829 |
| SRR9715743 | Root | 2.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.957 |
| SRR8749028 | MeJA induced 9h | 1.232 |
| SRR8749029 | MeJA induced 9h | 2.620 |
| SRR8749030 | Uninduced | 1.382 |
| SRR8749031 | Uninduced | 0.254 |
| SRR8749032 | Uninduced | 3.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 49.716 |
| SRR8400027 | Control - Root | 31.072 |