Gene detail information of Glyur004682s00041169 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G01510.1 | 3.00E-136 | Protein of unknown function, DUF647 |
| NR | XP_003530281.2 | 0 | PREDICTED: UPF0420 protein C16orf58 homolog [Glycine max] |
| Swissprot | tr|B6IDH3|RUS5_ARATH | 0 | Protein root UVB sensitive 5 {ECO:0000303|PubMed:19515790} |
| trEMBL | tr|K7L1U9|K7L1U9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G18120.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04682 | 2625 | 9189 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004682s00041169.1 | PF04884.9 | DUF647 | 113 | 348 | 2.30E-65 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.666 |
| SRR1783600 | control | 2.626 |
| SRR1783602 | moderate drought stress | 4.511 |
| SRR1811619 | moderate drought stress | 4.498 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.182 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.185 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.801 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.848 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.278 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.663 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 5.378 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 5.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.932 |
| SRR2868004 | Drought Stress (root) | 13.623 |
| SRR2967015 | Control (root) | 13.114 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.864 |
| SRR9715740 | Leaf | 14.162 |
| SRR9715741 | Leaf | 9.657 |
| SRR9715739 | Root | 0.889 |
| SRR9715742 | Root | 2.156 |
| SRR9715743 | Root | 2.176 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.555 |
| SRR8749028 | MeJA induced 9h | 3.010 |
| SRR8749029 | MeJA induced 9h | 0.998 |
| SRR8749030 | Uninduced | 3.006 |
| SRR8749031 | Uninduced | 0.752 |
| SRR8749032 | Uninduced | 0.884 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.050 |
| SRR8400027 | Control - Root | 11.366 |