Gene detail

Gene detail information of Glyur004637s00043298

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G42170.1	2.00E-20	BED zinc finger ;hAT family dimerisation domain
NR	XP_004493926.1	9.12E-118	PREDICTED: uncharacterized protein LOC101507795 isoform X1 [Cicer arietinum]
Swissprot	tr\|Q9M2N5\|DSLE_ARATH	2.00E-31	Zinc finger BED domain-containing protein DAYSLEEPER
trEMBL	tr\|K7M034\|K7M034_SOYBN	2.00E-107	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA13G22855.2}

Sequence

Transcript Sequence

>Glyur004637s00043298.1
ATGGCTACCCTTGAAGAAGGCAAAGTGGTGGTGACACCTGATACTTTGTCTAACAGTAATGTGGAAAATTTGGAGTCTCAACCCAACAAGGATCTCTGCAATTCCGAACCTACCAATGGTGTTGCAAATGAGTTGGACAACACCAAAGAATCTCTGAATAATGAGCTAGAGAATTCTGAATCACTACCCAACAACCAGAATGCCAATGCTGGGGCCTCAGACAACAATCAGCCAGTTAATTTTGAGGCAAAACTTGACAAGCCAACGGTCAACTCTGAAGCAGCACCTGATGATCAACTTGTTGGTTCCGAAGATACTCTTGACAAGAAGCCTGCTCCTGAGGCACCACCCAGCACCCAGGTGGTCAACTCTGAGGCACTGTCAAACAACGGTGTGGTTAATTCTGAAATGCAGACAAGTAATGATGTGGTTGTATCTGAAACACAGCATAGAGATGAGGTGGTTGTATCCGAAACACAAGACCNTGATGAGGGGGTGTTTGCATCCGAAACAAAGCACAGTGATGAGATGATTGAATCTCTTCCCCATGCTGAATCGCTGCCTAGATCTGAACCACTGNCAGACAGTCATCTCGCAGACGTTAAACCANTACCCCATAGTCACCTGGCTGAGTATGATACGCTNCCCAACAATCATCTGGACCATTCTGAGGCACTGGCAAACCATCAGCTGGCTAACTCTGAAACATTGTCCCATGATCAGCTAGTCAATTCCCAAATGATGACTCACTATGAGCTGGCAAATAGTGAAACACTTCACAACAATCAGCTGATCTGTTCTCAAGCACACTANGAGATAGTTAATGCTAACACTCATCCCAGCTATGAAATAGTAAATGCTGAAACTCTGCCAAACGANGANGAACATACCCCAGAAACACAACCAAATAAGAGGAGGAAAAAGAAGTCTATAGTCTGGGAACACTTTACCATAGAAAATGTCAGTGCTGGATGTAGAAGGGCATGCTGCAAGCAATGCAAACAAANTTTTGCCTANAGTACCGGCTCAAAAGTTGCTGGTACCAGTCACCTTAAACGACACATTGCCAAGGGGGCGTGCCCAGCTCTTCTCCGTAGTCAAGATCCAAATCAATTAACCCCATATACTCCGCGTTCAAGGGGAAGTGCCCCAATTCAACATGGTGACCTTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04637	6580	9815	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004637s00043298.1	PF02892.10	zf-BED	310	361	2.30E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.003
SRR1783600	control	28.987
SRR1783602	moderate drought stress	56.710
SRR1811619	moderate drought stress	54.964

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.342
DRR006520	Root Summer glycyrrhizin high producing strain	15.279
DRR006521	Root Winter glycyrrhizin high producing strain	7.355
DRR006522	Root Winter glycyrrhizin high producing strain	7.923
DRR006523	Root Summer glycyrrhizin low producing strain	28.843
DRR006524	Root Summer glycyrrhizin low producing strain	26.508
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.705
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.946

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.404
SRR2868004	Drought Stress (root)	13.140
SRR2967015	Control (root)	11.918

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.721
SRR9715740	Leaf	7.922
SRR9715741	Leaf	8.066
SRR9715739	Root	3.517
SRR9715742	Root	24.628
SRR9715743	Root	21.580

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.350
SRR8749028	MeJA induced 9h	13.156
SRR8749029	MeJA induced 9h	4.520
SRR8749030	Uninduced	4.332
SRR8749031	Uninduced	7.474
SRR8749032	Uninduced	4.922

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	20.347
SRR8400027	Control - Root	22.667