Gene detail information of Glyur004636s00041983.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G01470.1 | 8.00E-29 | homeobox 1 |
| NR | KHN13480.1 | 2.37E-117 | Homeobox-leucine zipper protein HAT5 [Glycine soja] |
| Swissprot | tr|Q6YWR4|HOX16_ORYSJ | 4.00E-33 | Homeobox-leucine zipper protein HOX16 |
| trEMBL | tr|K7L9Q7|K7L9Q7_SOYBN | 9.00E-117 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G40705.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04636 | 9596 | 12537 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | HB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004636s00041983.1 | PF00046.24 | Homeobox | 92 | 145 | 8.00E-16 |
| Glyur004636s00041983.1 | PF02183.13 | HALZ | 147 | 172 | 8.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.848 |
| SRR1783600 | control | 7.405 |
| SRR1783602 | moderate drought stress | 0.652 |
| SRR1811619 | moderate drought stress | 0.493 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.153 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.044 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.372 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.249 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.248 |
| SRR9715740 | Leaf | 1.884 |
| SRR9715741 | Leaf | 4.032 |
| SRR9715739 | Root | 0.014 |
| SRR9715742 | Root | 0.071 |
| SRR9715743 | Root | 0.055 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.067 |