Gene detail information of Glyur004621s00043795 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29850.1 | 4.00E-39 | Eukaryotic protein of unknown function (DUF872) |
| NR | AES65378.2 | 3.32E-63 | transmembrane-like protein [Medicago truncatula] |
| trEMBL | tr|G7IID5|G7IID5_MEDTR | 1.00E-63 | Transmembrane-like protein {ECO:0000313|EMBL:AES65378.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04621 | 4851 | 6048 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004621s00043795.1 | PF05915.7 | DUF872 | 16 | 102 | 1.10E-28 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 106.136 |
| SRR1783600 | control | 106.576 |
| SRR1783602 | moderate drought stress | 88.812 |
| SRR1811619 | moderate drought stress | 87.705 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 53.658 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 52.608 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 100.322 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 98.024 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 56.340 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 57.211 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.032 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.973 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 49.763 |
| SRR2868004 | Drought Stress (root) | 52.309 |
| SRR2967015 | Control (root) | 60.861 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 31.937 |
| SRR9715740 | Leaf | 33.865 |
| SRR9715741 | Leaf | 48.527 |
| SRR9715739 | Root | 21.937 |
| SRR9715742 | Root | 30.985 |
| SRR9715743 | Root | 30.339 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 310.016 |
| SRR8749028 | MeJA induced 9h | 337.689 |
| SRR8749029 | MeJA induced 9h | 674.265 |
| SRR8749030 | Uninduced | 186.137 |
| SRR8749031 | Uninduced | 516.332 |
| SRR8749032 | Uninduced | 411.544 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 77.158 |
| SRR8400027 | Control - Root | 68.400 |