Gene detail

Gene detail information of Glyur004617s00043572.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G47570.1	9.00E-151	Leucine-rich repeat protein kinase family protein
NR	XP_003616617.1	0	Kinase-like protein [Medicago truncatula]
COG	YP_004775215.1	1.00E-59	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGP4\|Y3475_ARATH	0	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 (Precursor)
trEMBL	tr\|I1M7V4\|I1M7V4_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G06580.1}

Sequence

Transcript Sequence

>Glyur004617s00043572.1
ATGAGTTCTATAAATGCCTTTTTATCAATATGCTTTCAAGTAAGATTGGCACTTATCAACAATCAAGACTGGGGTGGCACCCTTGGACCAGCCTTGGGAAATCTAACCTTCCTCAGAAGGCTCAACCTTTCCAACATCAATTTGCATGGTGAAATCCCAAGACAAGTTGGTCGTTTAAAGCGGTTGCAGATTCTTGACTTGAGCATGAACAATCTTCATGGAGAGATTCCTATGGAGCTCAATAACTGCACCAACCTCCAGGTAATTGACTTGTGGTACAATCAACCCACTGGAAAAGTTCCCTCATGGTTTGGGTCTATGATGCAGCTTACTAAGTTGCTTCTTGGTGCCAATAATCTAGTTGGTACTATCCCACCTTCCTTGGCAAACGTTTCATCACTCCAGATCATAATACTTAAGGAAAATCAATTGGAAGGGACCATACCTCATGCTTTGGGTAGGTTGTCAAATTTGAAAGAACTGGTTCTGAGTTTAAATAGTTTGTCAGGCTTAGTCCCTCATTCTCTTTACAACCTTTCAAATATTAAAAATTTTGCTCTCGCGAAAAACCAATTATTTGGTACTCTTCCATCGAATATACATCTTGCTTTTCCGAATCTTCAATTTTTCCTAATAGGAGGGAACCACTTCACGGGTACTTTCCCCACTTCAATATCCAATCTCACTGAGTTGAAAGATTTTGATATAGGCTACAATGGTTTTAATGGGCCAATACCTCATACTTTGGAAGGCTTAAACAAACTTCAGAGGTTTCACATTGCTAGAAATAGTTTCGGGAGTGGAGGAGCTCATGATTTGGATTTCCTTTCCTCATTAACCAATTGTACTCAATTGCAAGAACTAATATTNGATGACAATGGATTTGGTGGTGTGTTGCCAGATCTTATAGGCAACTTCTCTACCCAACTCAATTGGCTTAGTATGTGGAGCAATCAAATATCTGGAGTGATACNTGAGAGAATTGGACAACTAATCAGTTTGACTCAATTCAATATGATGGAGAATTTCCTTGAGGGAACAATTCCAAATTCAATTGGAAAGCTTCAAAATCTAGTAANATTGGTCTTGCAAGAAAACAATCTTTTTGGTAATATTCCTGCTTCCATTGGCAATCTTACTATGTTGTCTGAACTTTATATGCACATCAATAAATTTNAAGGAAGCATTCCATATACCCTCAGATATTGCAACCAGTTGCANACATTAAGTATTTCTGACAACTTCTTGAGTGGTGATATACCTAATCAAACTTTTGTCCATCTACAAGGTTTAGTAAATCTTGACCTGTCNAACAACTCCTTGTCAGGTACCCTTCCTTCTGAGTTCGGAAACTTGAAGCATATTTTCAGATTGTATTTAAACGGAAACAAGCTCTCTGGTGAAATTCCAAAGGAACTTGGTGCTTGTTCAGCATTGATTGAGCTTTTGCTGGAGTGGAACTTTTTCCATGGAAGTTTGCCTTCCTTCTTGGGTTCTTTGAGATCCCTCGAAGTCTTAGACCTTTCTCACAACAACTTCTCAAACACAATCCCCCTTGAACTTGAAAATCTCACATTTTTGAATGATTTAGACTTGTCCTTTAACAATCTCTATGGTGAGGTTCCCATAGGAGGTGTCTTTAGCAATGTCACAGCAATTTCACTAAATCGAAACAAGGATCTTTGTGGGGGGATACCTCAATTGAAGCTTCCAGCATGCTCTAGTAATTCACCCTTTAAGAAACACAAGAGATCTCTTAAAAAGAAATTTATTCTCATCATTGTAGTTGGTGGGGTTTTCATCTCTTTCATGGTTTTTACCACTCTCTACTATCTCCGCAATAAGCCCAAAAAGTCACTTTCTTCACCATCTCTTCAATATAAGCACTTAAGGGTTTCTTATGGAGAGCTGCATGAAGCAACCAATGGATTCTCTTCATCCAATTTGATAGGCATAGGAAGCTTTGGTTCCATTTACAGAGGATCTCTTCGCCACTTTGAAAGACCTATTGCTGTGAAGGTACTGAATCTTGAAACACGTGGGGCATCAAAGAGTTTCACTGCTGAATGCAAAGCACTGGGAAAGATGAAACATCGGAATCTTCTTAAGATCCTGACATGTTGTTCAAGTGTTGATTATAACGGTGAAGATTTCAAGGCTATAGTTTTTGAGTTCATGCCGAATGGGAGTCTAGAAAACTTGTTGCACGGCAATGAACAACACGAGTCTAGAATTGTAAACCTCAACCTTGCACAAAGGGTAAATATTGCTCTTGATGTAGCTCATGCATTGGATTATCTTCACCATGAATCCGAGCAAGTTGTTGTTCACTGTGATGTTAAACCAAGCAATGTTCTTCTTGATGATGACATTGTTGCCCACTTGGGAGACTTTGGATTAGCTAGGCTCGTTCATGGGGCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04617	109	2532	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.12.4

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004617s00043572.1	PF13855.1	LRR_8	38	95	1.00E-07
Glyur004617s00043572.1	PF13855.1	LRR_8	132	192	5.00E-07
Glyur004617s00043572.1	PF13855.1	LRR_8	405	465	1.60E-07
Glyur004617s00043572.1	PF00560.28	LRR_1	502	524	0.0063
Glyur004617s00043572.1	PF00069.20	Pkinase	647	803	1.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.151
SRR1783600	control	0.106
SRR1783602	moderate drought stress	0.173
SRR1811619	moderate drought stress	0.164

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.853
DRR006520	Root Summer glycyrrhizin high producing strain	0.598
DRR006521	Root Winter glycyrrhizin high producing strain	0.046
DRR006522	Root Winter glycyrrhizin high producing strain	0.045
DRR006523	Root Summer glycyrrhizin low producing strain	0.363
DRR006524	Root Summer glycyrrhizin low producing strain	0.418
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.257
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.164

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.056
SRR2868004	Drought Stress (root)	0.182
SRR2967015	Control (root)	0.080

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.624
SRR9715740	Leaf	0.311
SRR9715741	Leaf	0.625
SRR9715739	Root	0.191
SRR9715742	Root	1.537
SRR9715743	Root	1.347

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.166
SRR8749028	MeJA induced 9h	0.272
SRR8749029	MeJA induced 9h	0.248
SRR8749030	Uninduced	0.108
SRR8749031	Uninduced	0.030
SRR8749032	Uninduced	0.165

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.066
SRR8400027	Control - Root	0.067