Gene detail information of Glyur004616s00047746 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G34430.1 | 1.00E-119 | light-harvesting chlorophyll-protein complex II subunit B1 |
| NR | XP_006467509.1 | 1.31E-163 | PREDICTED: chlorophyll a-b binding protein 3C, chloroplastic-like [Citrus sinensis] |
| Swissprot | tr|P08221|CB21_CUCSA | 2.00E-163 | Chlorophyll a-b binding protein of LHCII type I, chloroplastic (Precursor; Fragment) |
| trEMBL | tr|V4UFD3|V4UFD3_9ROSI | 7.00E-164 | Uncharacterized protein {ECO:0000313|EMBL:ESR62885.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04616 | 9476 | 10171 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004616s00047746.1 | PF00504.16 | Chloroa_b-bind | 31 | 197 | 1.60E-48 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.336 |
| SRR1811619 | moderate drought stress | 0.026 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.160 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.156 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.097 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 119.751 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 117.695 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.000 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 55.888 |
| SRR9715740 | Leaf | 2.583 |
| SRR9715741 | Leaf | 15.199 |
| SRR9715739 | Root | 0.071 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.024 |
| SRR8400027 | Control - Root | 0.000 |