Gene detail information of Glyur004611s00039711 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G61140.1 | 0 | U5 small nuclear ribonucleoprotein helicase |
| NR | KHN17815.1 | 0 | Activating signal cointegrator 1 complex subunit 3 [Glycine soja] |
| COG | YP_004035351.1 | 7.00E-46 | superfamily ii helicase [Halogeometricum borinquense DSM 11551] |
| Swissprot | tr|Q588V7|TEB_ARATH | 5.00E-23 | Helicase and polymerase-containing protein TEBICHI |
| trEMBL | tr|K7KW51|K7KW51_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA06G21945.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04611 | 7585 | 13753 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004611s00039711.1 | PF00270.24 | DEAD | 445 | 618 | 6.30E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.709 |
| SRR1783600 | control | 1.866 |
| SRR1783602 | moderate drought stress | 3.264 |
| SRR1811619 | moderate drought stress | 3.360 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.153 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.024 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.967 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.932 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.551 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.480 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.309 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.246 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.029 |
| SRR2868004 | Drought Stress (root) | 11.535 |
| SRR2967015 | Control (root) | 12.875 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.554 |
| SRR9715740 | Leaf | 2.197 |
| SRR9715741 | Leaf | 1.809 |
| SRR9715739 | Root | 0.448 |
| SRR9715742 | Root | 7.899 |
| SRR9715743 | Root | 9.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.421 |
| SRR8749028 | MeJA induced 9h | 5.410 |
| SRR8749029 | MeJA induced 9h | 0.581 |
| SRR8749030 | Uninduced | 0.157 |
| SRR8749031 | Uninduced | 0.319 |
| SRR8749032 | Uninduced | 0.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 12.817 |
| SRR8400027 | Control - Root | 12.686 |