Gene detail

Gene detail information of Glyur004598s00042380

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G64680.1	2.00E-94
NR	XP_003601450.1	2.04E-154	hypothetical protein MTR_3g080840 [Medicago truncatula]
Swissprot	tr\|Q7XA78\|D27_ARATH	5.00E-49	Beta-carotene isomerase D27, chloroplastic (Precursor)
trEMBL	tr\|G7J804\|G7J804_MEDTR	8.00E-155	D27 family protein, putative {ECO:0000313\|EMBL:AES71701.1}

Sequence

Transcript Sequence

>Glyur004598s00042380.1
GAAAACAGAACATGATCATATTTATTATTTATGAAGTGGGGTTTTGGATAAGTTGTAGTAGTCTTGTGTGTGAAATTGTGAGTTCTTCATTGTGAGACTCAAAGACAGAGTGGGGAATTCATGGTGGTTCTGAGCTTTCAGCAGGTTGTCCCACCGCNAAGTCCTCCACAAAGAGCATGTGGTAATAGTAATAATACTAGTATCACTACTAGGATTCGGTGTGGGATAGCTGAGCCATCGGGTGAACCTGCTCCTCTGGGACAAAAGACGCGCTACAATGACAGCATTTTCGAGAAGGCCTTCATGACTCTGTTCGCACGAAAGATGGAAAAGTTTGCGGAACCCATAGTAGTAAATGCCAAAGAGAAGAAGAAGAAGAACAACAACAACAACAACAATAAGGGTTGGTGGGATTGGGGGTATGACTATGAGAGCTTCGTGGATGTGTCGAAGAGGGTAATGCAGCGAAGGTCTCGTNTTCAGCAGCAGCAAGTGGTGAGAGAGGTTCTCCTCTCTATGCTTCCTCCAGGTGCGCCTGCTCAGTTCAGGAAATTATTTCCACCAACAAAATGGGCTGCAGAGTTTAATGCTTTATTGACAGTGCCTTTCTTCCACTGGTTAGTTGGCCCTGCTGAGGTTGTGGAAGTAGAGATAAATGGGGTGAAGCAAAAGAGTGGCGTCCATATAAAGAAGTGCAGGTACCTGGAGAACAGTGGCTGTGTTGGAATGTGTGTCAATATGTGCAAGATTCCTACCCAAGATTTTTTCACCAATGAATTTGGACTTCCATTAACAATGATTCCAAATTTTGAAGACATGAGTTGTGATATGGTGTATGGCCAAGCACCACCTACATTTGAAGAGGACCCAGCTTCCAAACAACCTTGTTATGCTGATATATGTTCTGTAGCAAATCCAAGCTCCAGTGTGTGTCCTAAACTACAAACATGAGCAGACACTCCATTCAGATTTAATTTTTTTGTTGTTGCAGATTTGGAGTGTGTGGAAATCTGTTTGAGAGTCTCAAATGCAACTTTGAGTCAACCCACACAGAGAGATGGATTGGCTCAAACTTGTGTTATTAGCTTTTTACTTTTCTTCTCCCATATAGTTATTGCACTCACAAGTCACAACACTGATAAATTTGTAACGTCAAATATATGTAGTAACACCCTTAGTCCACTGTGGGTAAATCAAGATGTCTATCCTAAGCTTTCAAGTTGTGCCCGGTGTCACAGTGAAAAGGCCAACATTTTCAACATTGCAAACTAAAGGATGACTTATTGATGTATGCAGTTTCAAACTTATAATCAAATGGGAAATTATACATAGAGTATGGATGGAGAGAGGATCTATGAGCGTACATATTCAAGATTGAGTTAATATATGTATATGTGATTATGTTCACTAGTTTTTGAAGATTATGTACCGAGCAGGAATCTTGTAAAGTGGTTGTCTTGAGCTTTCCGTTTGGCTGGAAGGTTTGATATATTTAAGCTGGGGAATACATACAAACAGTGAAGAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04598	686	4470	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004598s00042380.1	PF13225.1	DUF4033	166	249	6.70E-39
Glyur004598s00042380.2	PF13225.1	DUF4033	166	249	6.10E-39

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.131
SRR1783600	control	0.084
SRR1783602	moderate drought stress	0.124
SRR1811619	moderate drought stress	0.162

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.070
DRR006521	Root Winter glycyrrhizin high producing strain	0.621
DRR006522	Root Winter glycyrrhizin high producing strain	0.601
DRR006523	Root Summer glycyrrhizin low producing strain	0.036
DRR006524	Root Summer glycyrrhizin low producing strain	0.036
DRR006525	Leaf Summer glycyrrhizin high producing strain	50.602
DRR006526	Leaf Summer glycyrrhizin high producing strain	50.618

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.975
SRR2868004	Drought Stress (root)	1.886
SRR2967015	Control (root)	0.516

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	53.291
SRR9715740	Leaf	69.028
SRR9715741	Leaf	61.542
SRR9715739	Root	0.130
SRR9715742	Root	0.895
SRR9715743	Root	0.317

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.432
SRR8749028	MeJA induced 9h	1.860
SRR8749029	MeJA induced 9h	1.670
SRR8749030	Uninduced	1.132
SRR8749031	Uninduced	0.997
SRR8749032	Uninduced	1.723

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.170
SRR8400027	Control - Root	1.559