Gene detail

Gene detail information of Glyur004591s00045196.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G46660.1	4.00E-155	cytochrome P450, family 78, subfamily A, polypeptide 6
NR	XP_004510631.1	0	PREDICTED: cytochrome P450 78A3-like [Cicer arietinum]
COG	YP_004596270.1	2.00E-11	Unspecific monooxygenase [Halopiger xanaduensis SH-6]
Swissprot	tr\|O48927\|C78A3_SOYBN	0	Cytochrome P450 78A3
trEMBL	tr\|V7ANP6\|V7ANP6_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07287.1}

Sequence

Transcript Sequence

>Glyur004591s00045196.1
ATGGCAACCCTCATCAATAACCTCTGGGTGTTTGCACTGGCTTTCAGATGCACACAAGATCAGAACATTGGCTGGTCCCTTTTGATAATGGCTGCCTCACTCTGGTTAGCCATGACTTTCATTTACTGGTGTCACCCTGGTGGTCCTGCCTGGGGCAAGTACTACCCCTTCTACTCTACCACCTGGAGAAAAACCAACAACCACCTTCCCTCACCACCTACTACTAGTACTAGTACTACTTCTACCAGTACCACTACCACTGATCACTCAATAACAAAAAAACCGACGAAAATTCCTGGTCCTAGAGGGTACCCTTTAATCGGGAGCATGAATCTCATGTCGAGCTCACTGCCACACCACCGTATTGCGGCGGCTGCAAAGGCATGCCGGGCCACGAGGCTCATGTCGTTCAGCCTCGGCGACACACGTGCCACCCTGACCCCAGTCTTCGCCGATCGACCCATCAAGGGATCCGCTTACGCCCTCATGTTCGACCGCGCCATCGGGTTCGCCCCTTACGGCGTTTACTGGCGAACCCTTCGGAAGATTGCCACCGAGCACTTCTTCTCCCCAATGCAAATCAAGTCCTCCGAGTCCCAACGCTCTCAAATCGCAGCCCAGATGGTCCACTCTTTCCGAAACAACGGTAGTTTGGGCCCGGGCCTCACCGTTCGCCAGATCCTCAAGAGGGCCTCGCTCAGTAACATGATGTGGTCGGTGTTTGGACAGAGGTATAGGCTTGACGGGGAGCCAAACGAGGAGAAGCTAATCAGGGGATTGGTGGAGCAAGGGTATGACTTGTTGGGTAAACTTAATTGGGGTGACCATCTCCCTTTCCTCAAGGAGCACTTCGATTCGCAGAGAATCAGCTCCGAACTCGTCCCCAGGATGAACCGGTTCGTCGGCACAATCATCGCCGATCACCAAACCGACGACAAAACCCAGACCCACCGGGATTTCGTTCATGTCTTGCTCTCTCTCCAAGAACCTGATAAATTGTCTGAATCCGACATGATTGCTGTACTCTGGGAAATGATATTTAGGGGGAGTGACACGGTGGCGGTTTTGATTGAGTGGATACTAGCCAGGATGGTGCTTCATCCTAATGTGCAGGGGAGGGTGCAGAAGGAGCTGGACCAGGTGGCGGTGACGGATGGGGTGTCACGCGCCGTGACGGAGGATGACATGGCGGCGACGGTGTACCTGCCGGCGGTGGTGAAGGAGGTTTTGAGGATGCACCCAACGGAACCACTTCTCTCGTGCCCCCGCTTGGCCATGACTAATACGACAATTGATGGTGACCCACTCGAATTTAAACCCGAGAGGTTCATGGGCGAGGAGGGGGAACCCGAGTTCTCGGTTCTCGGGTCGGATCTGAGGCTGGCACCGTTCGGGTCAGGCAGGAGGTGTTGCCCCGGGAAGACTCTGGGTTTGACCGCCGTGACCTTCTGGGTGGCAAAGCTGTTGCACGAGTTCGAATGGCTACCGTCGGATGAGGGGAATGGGGTTGATCTAACGGAGGTTCTGAGGGTATCATGTGAAATGGCTAACCCTCTCACTGTTAGGGTGCGCCCCAGGCGTGCGACGAGGGATCTCTCATATCTATGTTCCATTCCATCGCTTCTGGTGCTTGGATCGGATTCGCACAATTTTCATTCCCCCTTACACTACGCCGTTTCAGTTGCTGGTTCTGGCTCTGTAGATAGTCATCTAGATAAGTCTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04591	42	2057	+

Gene family

Gene family	subfamily
Cytochrome P450 Family	CYP78A6

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen

GO:0020037 heme binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004591s00045196.1	PF00067.17	p450	165	433	5.00E-35
Glyur004591s00045196.1	PF00067.17	p450	434	501	1.30E-10

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.233
SRR1783600	control	1.007
SRR1783602	moderate drought stress	0.631
SRR1811619	moderate drought stress	0.878

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.612
DRR006520	Root Summer glycyrrhizin high producing strain	0.594
DRR006521	Root Winter glycyrrhizin high producing strain	0.234
DRR006522	Root Winter glycyrrhizin high producing strain	0.584
DRR006523	Root Summer glycyrrhizin low producing strain	1.294
DRR006524	Root Summer glycyrrhizin low producing strain	1.510
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.307
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.227

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.833
SRR2868004	Drought Stress (root)	1.620
SRR2967015	Control (root)	2.084

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.998
SRR9715740	Leaf	0.892
SRR9715741	Leaf	1.049
SRR9715739	Root	3.725
SRR9715742	Root	1.443
SRR9715743	Root	2.161

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.300
SRR8749028	MeJA induced 9h	0.524
SRR8749029	MeJA induced 9h	0.067
SRR8749030	Uninduced	0.139
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.738
SRR8400027	Control - Root	0.378