Gene detail

Gene detail information of Glyur004580s00043248

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G17680.1	4.00E-94	disease resistance protein (TIR-NBS-LRR class), putative
NR	XP_004516106.1	0	PREDICTED: TMV resistance protein N-like isoform X1 [Cicer arietinum]
COG	YP_001520699.1	2.00E-07	TPR domain-containing protein [Acaryochloris marina MBIC11017]
Swissprot	tr\|O82500\|Y4117_ARATH	3.00E-88	Putative disease resistance protein At4g11170
trEMBL	tr\|A0A072V7A5\|A0A072V7A5_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:KEH34050.1}

Sequence

Transcript Sequence

>Glyur004580s00043248.1
ATGTCAACGAGTGAGTCCGACTTAATCAATGCCATTGTCGAAGATGTTTTGGAAAAACTGAAACCTATNTACCCATCATATGAAATCAAGGGACTTGTTGGAATTGAGGAAAAAATTGAGCAGGTGGAATCTTTACTGAATATTGGGTCAAACTCAAATGATGTTAGAATCGTTGGAATATGGGGCATGGGTGGCATGGGTAAGACCACCCTTGCTACTGCTTTGCATGCTAAACTGCATTCCCAATTTGAAGGTCATTGCTTCCTCGCAAATGTAAGAGAAAAATATCAAAACAAGTGTGGACTCAATTTTGTATTTAAGGATCTTTTTTCAGCATTGCTAAAGGAAGATATTCGTCCTGATGCACCTTGGGTAGACATCCCTTTCTTCCAAAGAAGGCTTGCATGTAAAAAAGTTTTCATTGTGTTGGACGATGTGGATAGCTCAGGGCAAATAGAAGATCTTATCGATTGCTTGGGACCAGGTAGCAGAGTCATTGTTACAACTAGAGATAAGCAAGTATTTAGCCAATTTGGTGACAGTGAAATATACGAGGTCAAGGAATTGAACTTTCATGACTCTCTTCAGCTATTTTGTTTAACTGTCTTTGGAGAAAAGCATCCTAAAATTGGATATGAGGATCTATCAAGAAGAGTAAGTGTCTATTGCAATGGCAATCCTTTGGCTTTAAATGTTTTAGGTGCAAATCTCCGTTCAAAAAGTGTAGAATTTTGGAAAAGCGAATTGGATAAGCTCCAAAAGATTCCCAATGTGAAAATTCATACTGTGTTAAAATTGAGTTTTGATGGCTTATTAGATCGTTTCCAAAAGGACATTTTCCTAGACATCGCATGCCTAATGAAATATTGGTCTATTGATCGTGTAACAAGTGTATTGGACGCTTGTGGTTTCCATGCAGTAAGTGGCATAGAAGTTCTTCAAGATAAAGCTCTCATACAACTAAAAAATTCTGGTAATTCGTACCGTTCCCAGCGTGTTGTAATGCATGATTTGATACGAGAAACGGGACGGGAGATTGTTAATCAAGAATCTAAAGACCCCGGAAAACGAAGTCGATTGTGGAGAACTGAAGAAGTGTGTGATGTATTGAAAAAAAACAAGGGAACTAAAGTTGTTGAAGCAATGAAGCTCGATATGTCTGAATTAGTTAAGGATCTAAATCTGGGCCCTGATTCCTTTAAAAGGATGATTAACTTGAGATTTCTTGAAATCTGTGGCTACTATGGGGCAATTAAAAATGTGTGCTTCCCTGACGGTCTTGGGTGGTTGTCTGAGGAATTGAGGTACCTTCACTGGCATGCATTCAATCTTGAGTCATTGCCACCAAACTTTTGTACTGAAATGCTAGTAGAGCTTCACATGCGTGATAGCCGGCTGATAAGGCTTTGGGATGGAGTTCAGGAAATGATGTGGCTGACCTTAAGGTGCACCGCCATCCGTGAATTGCCGTCATCCATTTGGCGGAACAGCAAACTTACGCTACTAGATTTAGGATATTGCGTAATGTTGGAAAGCCTTAAATCCGACTTTCATTCAAAATCTCTCCGTCGACTCGATCTCGATGGTTGTTCCTCTCTCACGGAATTCTCTGTGACATCGGAGGAAATGACGAAGTTGACCTTAAGTGGCACTGCCATACGACTGGGTTCTCTTACAGAACTGGACCTTTCAGGGTGCACACAGATCAATGCATCCAATCTGGGGTCCATCCTGGATGGCATACAGTCTTTACAATGGCTAGAATTGAGTGGGTGTTGCAACTTAGAAGCCATCCCCCACAACATCCAAAACCATTCCAAGTTGGTAGTGCTTTGGTTAGATGATTGCAGGAAGCTTGTGTCTCTACCAGCAGAGCTCCCGCCATCCCTGAAAGCTTTCCCAGCCGCTAATTGCACTTCTCTGGACACAAACTCTACTCAAGGGCCAGTGCATGAGAACATGTTACAAAGCATGTCGGACATGTCCTCATTGTCCTGTATACCCGATGAAAATGAATGGGGTGAGCCTTTCTACGTATTTCCAGGAGACCAAGTTCCGGCCAAGTTTAGGTTTCATATGAGCAAAGGGGCTTCAATAACTATTCCTCCTATCCCCAAATCTGACTTCCGCGCTTTCATTTTTTACATCATTCTTTCTGAAGGCCTACATCTTTACAAAGGAACATGTAGCCTCAAGTGTTCTATCTATGAACCCGGCAAAGAAGTCGATGCTTGGTCTCCATGTTATCTGCAGATGCTGTCTGATGTGACCTTATTAATCTCAGATCACGTGTTGGTATTCCGGTATACTAACCACAAGATACGAGAAAATGGAGATCATAACCTATCATTTGAATTCACACATGCATTTTGGAATGAGGGTGCAGGTTATTGGTCAAGGGAGGGGATAAAGGGGTGTGGGGTGTTGCCATTAAATGCCTGTGAAATGGGGTTGGACTTGGAACAGCTTGTTATGCCCGCAAACAAGAGAAGGAGAACTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04580	1386	6037	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004580s00043248.1	PF00931.17	NB-ARC	36	306	5.00E-39
Glyur004580s00043248.1	PF07725.7	LRR_3	456	474	0.00015
Glyur004580s00043248.1	PF13504.1	LRR_7	521	536	2.8
Glyur004580s00043248.1	PF13504.1	LRR_7	556	567	5.5
Glyur004580s00043248.1	PF00560.28	LRR_1	583	604	0.25

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.330
SRR1783600	control	3.877
SRR1783602	moderate drought stress	4.192
SRR1811619	moderate drought stress	4.209

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.496
DRR006520	Root Summer glycyrrhizin high producing strain	1.239
DRR006521	Root Winter glycyrrhizin high producing strain	0.223
DRR006522	Root Winter glycyrrhizin high producing strain	0.152
DRR006523	Root Summer glycyrrhizin low producing strain	0.130
DRR006524	Root Summer glycyrrhizin low producing strain	0.035
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.780
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.668

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.113
SRR2868004	Drought Stress (root)	0.160
SRR2967015	Control (root)	0.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.427
SRR9715740	Leaf	0.037
SRR9715741	Leaf	6.091
SRR9715739	Root	0.000
SRR9715742	Root	0.174
SRR9715743	Root	0.107

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.012
SRR8749030	Uninduced	0.023
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.011

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.236
SRR8400027	Control - Root	3.792