Gene detail information of Glyur004568s00045021 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G24090.1 | 2.00E-37 | chitinase A |
| NR | CAA88593.1 | 1.24E-91 | chitinase homologue [Sesbania rostrata] |
| Swissprot | tr|P51614|CHIT3_VITVI | 1.00E-53 | Acidic endochitinase (Precursor) |
| trEMBL | tr|Q41401|Q41401_SESRO | 5.00E-92 | Chitinase homologue {ECO:0000313|EMBL:CAA88593.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold04568 | 13514 | 14035 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01183 | E3.2.1.14 | EC:3.2.1.14 | Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur004568s00045021.1 | PF00704.23 | Glyco_hydro_18 | 32 | 162 | 1.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1127.071 |
| SRR1783600 | control | 1122.810 |
| SRR1783602 | moderate drought stress | 2333.429 |
| SRR1811619 | moderate drought stress | 2342.785 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 439.766 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 452.002 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.489 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.556 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 67.865 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 68.337 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 17.454 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.358 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.508 |
| SRR2868004 | Drought Stress (root) | 3.345 |
| SRR2967015 | Control (root) | 3.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 629.794 |
| SRR9715740 | Leaf | 130.953 |
| SRR9715741 | Leaf | 160.734 |
| SRR9715739 | Root | 134.668 |
| SRR9715742 | Root | 102.130 |
| SRR9715743 | Root | 109.812 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.395 |
| SRR8749028 | MeJA induced 9h | 3.362 |
| SRR8749029 | MeJA induced 9h | 0.543 |
| SRR8749030 | Uninduced | 1.506 |
| SRR8749031 | Uninduced | 2.411 |
| SRR8749032 | Uninduced | 5.666 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 100.194 |
| SRR8400027 | Control - Root | 10.458 |