Gene detail

Gene detail information of Glyur004558s00045977

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G19000.1	2.00E-110	2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
NR	KEH40747.1	0	gibberellin 2-beta-dioxygenase [Medicago truncatula]
COG	YP_001341292.1	9.00E-45	2OG-Fe(II) oxygenase [Marinomonas sp. MWYL1]
Swissprot	tr\|Q9ZWQ9\|FLS_CITUN	1.00E-56	Flavonol synthase/flavanone 3-hydroxylase
trEMBL	tr\|A0A072VG19\|A0A072VG19_MEDTR	0	Gibberellin 2-beta-dioxygenase {ECO:0000313\|EMBL:KEH40747.1}

Sequence

Transcript Sequence

>Glyur004558s00045977.1
AAACACTTATATCATATGATTAAATAAGTTGTTTATCCGAACATGTCGGTTTAATTGTATAGATTGTGTCAATGTTTCAACTTGTTATTGTATACCGGTAATTAATTTCATCCACCACATACCAACAAAAAACACGTCTAGTTTCCAATGTGTATATATATATATATATGTGTGTGGACACCAACACCAATACACAGCCCTCTATACAACTCTTCCTTCCAAATATTGTTGTGATCATTGGTAATTTCTTTAAGAAATCATCATCATAATGGGAGAGATTGATCCAGCTTTCATTCAGGCACCAGAGCACAGACCAAAGCTCTGTGTCAAAGAAGCTGANGGCATCCCAGTGATAGACCTTTCCCCTATATTAGGTGATTCCAGTTCCACTGACCCTTCAGCCTTTGATGAACTNGTGAGGCAAATAGGCAGTGCATGCAAGGAGTGGGGGTTCTTCCAAGTGATCAATCACGGATCTCCTGTTGAAAGCAGGCAGAGGATTGAATCTGTTGGGAAGAAGTTCTTTGCACAGAGCATGGAGGAGAAGNGGAAAGTGAGGAGGGATGTTGTGAATGTGATGGGGTATTATGAAACTGAGCATACCAAGAACATTAGGGACTGGAAAGAGGTGTTTGATTTTACTTTGGAGGAACCAACCTTGATGCCTGCTTCAGTTGACCCTGATGAGAAGGAGATCACTCATTGGTATAATCAGTGGCCAGAGTACCCACCAGATATGAGAGAGGCATTCCAAGAATATGCTCATCACATGGAAACACTAGCACTGAAGTTAATGGAGCTTATTGCTCTGAGCCTAGGCTTGACCACAAAAAGATTTCATGGCTTCTTCAAAGACCAAACAAGCTGGATCAGGCTCAATTATTACCCACCTTGCCCCTCCCCTGACCTTGTTCTTGGATGTGGTCGCCACAAGGACTCTGGTGCTTTAACCGTCCTTGCTCAAGATGAGGTTTGTGGCCTAGAAGTGAAGCGAAAATNTGATGGGGAATGGGTTCTGGTCAAACCCTTACCTGATGCTTATATTATCAATGTTGGAGACGTAATTCAGGTTTGGAGTAATGATGCATATGAGAGTGTTGAGCACAGAGTTATGCTGAACAATGAGAAGGCAAGGCTTTCGTACCCATTCTTTCTCTTTCCTGCACACTACACCATGGTGGAGCCTTTGAAGGAGCTGACAAATGAGCAAAACCCTCCCAAATATAGGCCTTATAATTGGGGCAACTTTTTAGCTATGAGAAAGCGTAGCAATTTCATGAAACTTGATGTTGAAAACATCCAAATACATCATTTCAGGATTAATTAGTTGACGGCATTTTAAAATGATGCTGTNATAATCGATGTATTTGGAAAGCATAGCGTGAATATGATATGCGTCATCAAGCTGGTATATGAATAAGACGCTATTATGACAATAATGTATTATCTTAATAAGGAGCCACTGGCCCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04558	5213	10577	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004558s00045977.1	PF14226.1	DIOX_N	26	152	9.00E-31
Glyur004558s00045977.1	PF03171.15	2OG-FeII_Oxy	199	298	2.30E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	174.553
SRR1783600	control	174.943
SRR1783602	moderate drought stress	110.963
SRR1811619	moderate drought stress	110.606

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	228.529
DRR006520	Root Summer glycyrrhizin high producing strain	224.063
DRR006521	Root Winter glycyrrhizin high producing strain	10.624
DRR006522	Root Winter glycyrrhizin high producing strain	10.311
DRR006523	Root Summer glycyrrhizin low producing strain	49.897
DRR006524	Root Summer glycyrrhizin low producing strain	48.837
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.000
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.000

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	13.703
SRR2868004	Drought Stress (root)	108.479
SRR2967015	Control (root)	94.643

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.091
SRR9715740	Leaf	0.343
SRR9715741	Leaf	0.000
SRR9715739	Root	287.664
SRR9715742	Root	436.188
SRR9715743	Root	410.490

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	518.982
SRR8400027	Control - Root	1153.818