Gene detail

Gene detail information of Glyur004546s00040115

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G10890.1	5.00E-10
NR	KEH36426.1	2.59E-100	hypothetical protein MTR_2g007150 [Medicago truncatula]
Swissprot	tr\|P0CB26\|Y1089_ARATH	1.00E-63	Uncharacterized protein At1g10890
trEMBL	tr\|A0A072V448\|A0A072V448_MEDTR	1.00E-100	Uncharacterized protein {ECO:0000313\|EMBL:KEH36426.1}

Sequence

Transcript Sequence

>Glyur004546s00040115.1
ATGCAGTTTGGTCCACCTTCGTCCTCCTCCATCGTGTTAGGGTTTGCAGAGTTTCAATTTCCCACAACATCGCAATTCCTCCGTATTTCTGTTTCTAGAACTCGCGAAATCCAACTCTATTTCACGATATCTCTGTTCCTCGATTACTGGAAACTTTTTCTTGGTATTAGGAGATGCCTCGAGACTTGTCGCGATCCCGATCACCTCCCTACAGGCGCAGGCATTCGCCATCTCCTGTGGGACACAGCATGGAAAGCAAGGGATATGAACAGGTGCTGGGTTCTGGTAAGTGTTTTTTCATTGCTCGATTGTGACATTTGCTTCTCCATGTCGCGAAAAAGTCGTTCTATTTCACCAAGGGGCCACAGAAGTCCTTCTACAACTACATGGCGTCGTAGGAGTCGATCTCCAACTGCAAAACGATACAGAAGACATAGAAGTAGGAGTTCCTCATTGTCTCCTGCTCATAAATCTTCCAGTTCAAGCCTTGGGTCAGTAGAGCACAAAACTGCCATTGAAAAACAAAGGAAAGAAGAAGAGAAGAAAAGGCGTCAACAGGAAGCAGAGTTGAAATTAATAGAAGAAGAGACTGCAAAAAGGGTTGAGGAAGCAATTCGTAAGAGAGTTGAAGAAAGCTTGAATTCTGAGGAGGTTCAGGTGGAGATTCAGAGGCGGTTGGAAGAGGGAAGAAAGAGACTTCAGGATGAAGTTGCTGCTCAACTTGAAAAAGAAAAGGAAGCTGCTCTTATTGAGGCTAGACAGAAAGAGGAACAAGCTCGTAAAGAGAAGGAAGATCTTGAAAGGATGCTTGAGGAGAACCGGAGGAAGATTGAGGAAGCTCAGAGAAGGGAAGCTCTAGAGCAGCAAAGAAGGGAGGAGGAACGGTATAGAGAGCTAGAAGAGCTACAGAGACAGAAAGAAGAAGCCATGAGAAGGAAGAAACAGGAGGAGGAACAAGAACGTTTAAACCAAATAAAGTTGTTGGGAAAAAACAAGTCCCGTCCTAAATTGTCATTTGCTCTTGGATCGAAATGACCGTTGGGCAACCTTTATCTGTCTAGTATATTTATTTGTCTAAAGCGTTTGGGCTTAACTCTGTATTTGCATCTGCAATTTAATTAAGGAAATTACACAGCCTCCTCAGCTTCAGTGTGACAAGCGTTGTTACTCCNTTCCAGTTTGCATTAGATTTGATTGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold04546	3401	8600	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur004546s00040115.1	PF15346.1	ARGLU	186	341	5.00E-48
Glyur004546s00040115.2	PF15346.1	ARGLU	100	255	2.40E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	14.797
SRR1783600	control	14.133
SRR1783602	moderate drought stress	23.434
SRR1811619	moderate drought stress	23.185

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.114
DRR006520	Root Summer glycyrrhizin high producing strain	25.516
DRR006521	Root Winter glycyrrhizin high producing strain	31.142
DRR006522	Root Winter glycyrrhizin high producing strain	29.435
DRR006523	Root Summer glycyrrhizin low producing strain	34.868
DRR006524	Root Summer glycyrrhizin low producing strain	34.040
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.374
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.238

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	48.065
SRR2868004	Drought Stress (root)	61.399
SRR2967015	Control (root)	55.448

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.418
SRR9715740	Leaf	32.955
SRR9715741	Leaf	41.853
SRR9715739	Root	1.818
SRR9715742	Root	13.388
SRR9715743	Root	12.099

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	82.869
SRR8749028	MeJA induced 9h	103.253
SRR8749029	MeJA induced 9h	119.359
SRR8749030	Uninduced	218.254
SRR8749031	Uninduced	216.044
SRR8749032	Uninduced	171.676

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	52.953
SRR8400027	Control - Root	47.712